Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01617 ATGATTACCTTTATGGATTCAAATGAGAAATTGAAAGTGGTGGAGAAGTGCTTGGATCCTCAATTTTGGCATGCGTGTGCTGGAAAGATGGTGCAAATACCAAACGTTAACGCCAAAGTTTTCTACTTTCCTCAGGGCCATGCCGAGCACGCATCTGGACATGTGGATTTCAGGAATTGCTCGAAGCTTCCACCTTATATTATGTGCAGGGTGTCTGCTATAAAGTTCTTGGCTGATCCTGAAACTGATGAAGTTTATGCAAACATCAGACTTGTACCTGTGATGGAAAATGAACCTGATTTTGAAGATGATGGAATTGGTGGGCTCAATGCTTCGGATAATCAGGACAAACCTGCTTCATTCGCTAAGACATTGACTCAGTCTGATGCAAATAATGGAGGGGGTTTCTCTGTACCAAGATGTTGTGCAGAGACAATTTTTCCTCGTTTAAATTATTCTGCAGATCCTCCAGTTCAAGCTATCCTCGCTAAGGATGTTCATGGAGAAACATGGAAATTCAGGCATATTTACAGGGGTACGCCGAGGCGCCATCTTCTTACCACTGGGTGGAGTAATTTTGTGAACCACAAGAAACTTGTTGCAGGAGACTCAATTGTGTTTTTTAGGGCACAAAATGGGGATCTTTGTGTTGGAATCAGAAGAGCTAAAAGGGGAATTTTATGTGGACCTGAGTCTCCAACAGGCTGGAATCGTGCAGGTAGAAACTGTGGTGTCCCATATGCAGGAATTTCTGCATTTCTGAATGAAGACAACAAACTGATGAAAAATACAAATGGCAATGATTTAAGTTCAAATGGGGATCCAATGGGGAGAGGGAAAGTGACGCCTGATGCAGTTATTGAAGCTGCAAACCTTGCTGCTAAAGGACAACCATTTGAGGTTACTTACTACCCACGAGCAAGTACTCCAGAGTTTTGCGTGAAGGCCTCATCGGTGAAAGCAGCATTGCAGATACGGTGGTGCTCTGAGATGAGGTTCAAAATGACCTTTGAAACTGAGGATTCCTCACAGAGGAATCCGCCTTCGGGAACGATAACGTCAGTTCAGGTTGCTGACCCCCTTCACTGGCCAGATTCACCTTGGAGGCTTCTCCAGGTTACCTGGGATGAACCAAATTTATTTCAAAATGTCAAACGGGTTAGTCCATGGCTGGTGGATTTGGTTTCATACATTCCTTCCCCTCTCTCACCGCCAACGAAGAAGATGAGAATGCAGCAGTTCTCAGACTTCACCCTTGACGGCCAAAGTCCACTTCCAACATTTTCTACCAATATCCTCGGGTTCAATAGTCCCTTTATTTTCTTACCAAATAATACTCCTGCTGGCATGCAGGGAGCCAGGCACGCTCATTATGGTCTCTCTTTACCAGATCTCCACCTCAATAGAATGCACTCAGGTTTACTTTCAGCCCATTTCCGAACACTCGATCTTGCTGCTACACCACCTAAGGTCTCGAATGGCCTAATGATGCAAAAAGCGTGCGTGAATGAGAATACATCTTGGTTACTGACGGCGGGTAATCCTACAACTCCAAATAAGGTTGAGGACGTGAAGAGACCTCAAATTAGGCTTTTTGGTCAACCAATACTTACTGAGCAGCAGATATCTCTCAGTCGTTCCTTTGAAACACCGTCGCCAGTCTGTACAGGATCATCTGAACGTAATGCTGAGAAGATCGCCAACTTCTGTGATGTGACTGGATCTGCTCTCAATCAACAAGGCCTACAAGAACGGCGGACTTGTGATGGGTTCCTGTGGTATAAGGATAGCTGTCAAGAAACCGAACGTGGTTTGGAGACAGGTCACTGCAAAGTTTTTATGGAATCAGAAGATGTAGGGCGCACACTCGACTTGTCACTGCTTGGATCATATGAAGAATTATGCAGAAAGCTGGCAGACATGTTTGGAGTGAAAAATCCTGAAATGCTCAACCACATGCTCTACCTTGATCTAACTGGGACTGTCAAAAAAATTGGCGAGGAACCATTCAGTGATTTCATGAGATCAGCCAGGAGGTTGACAATTCCAACTGGTTAG 2058 0.4466 MITFMDSNEKLKVVEKCLDPQFWHACAGKMVQIPNVNAKVFYFPQGHAEHASGHVDFRNCSKLPPYIMCRVSAIKFLADPETDEVYANIRLVPVMENEPDFEDDGIGGLNASDNQDKPASFAKTLTQSDANNGGGFSVPRCCAETIFPRLNYSADPPVQAILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFFRAQNGDLCVGIRRAKRGILCGPESPTGWNRAGRNCGVPYAGISAFLNEDNKLMKNTNGNDLSSNGDPMGRGKVTPDAVIEAANLAAKGQPFEVTYYPRASTPEFCVKASSVKAALQIRWCSEMRFKMTFETEDSSQRNPPSGTITSVQVADPLHWPDSPWRLLQVTWDEPNLFQNVKRVSPWLVDLVSYIPSPLSPPTKKMRMQQFSDFTLDGQSPLPTFSTNILGFNSPFIFLPNNTPAGMQGARHAHYGLSLPDLHLNRMHSGLLSAHFRTLDLAATPPKVSNGLMMQKACVNENTSWLLTAGNPTTPNKVEDVKRPQIRLFGQPILTEQQISLSRSFETPSPVCTGSSERNAEKIANFCDVTGSALNQQGLQERRTCDGFLWYKDSCQETERGLETGHCKVFMESEDVGRTLDLSLLGSYEELCRKLADMFGVKNPEMLNHMLYLDLTGTVKKIGEEPFSDFMRSARRLTIPTG* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01617 685 Gene3D - 119 223 IPR015300 -
Pte18g01617 685 ProSiteProfiles PB1 domain profile. 607 685 IPR000270 GO:0005515
Pte18g01617 685 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte18g01617 685 CDD B3_DNA 120 221 IPR003340 GO:0003677
Pte18g01617 685 Gene3D - 326 399 - -
Pte18g01617 685 FunFam Auxin response factor 119 223 - -
Pte18g01617 685 SUPERFAMILY DNA-binding pseudobarrel domain 115 222 IPR015300 -
Pte18g01617 685 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Pte18g01617 685 SMART B3_2 121 223 IPR003340 GO:0003677
Pte18g01617 685 Gene3D - 605 685 - -
Pte18g01617 685 FunFam Auxin response factor 326 399 - -
Pte18g01617 685 Pfam Auxin response factor 289 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte18g01617 685 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01617 Pte-Chr18 27634439 27638848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01617 14 684 B3 DNA Binding Superfamily AT4G30080 54.360 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte18g01617 B3 1.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01617 - - zju:107426336 1001.5