Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01614 ATGTCGACCTCTGCCGCTTCGTTAGCTCTACCCTCTCGTCATCTCAACCCAAGGACTCAATCGCTCTGTAGCACACAACCCGCTACCGATTATGTGCACCTTGTTTCTTCCATTTCTCTTGGGCTTCGTTCTAAGCTCATTTCCGCTCCTTCCTCTTCGTTTCTCAATTCTGATTGCAGGACGCGGTACCAGATTCAGACCATGTCATCTCGTTTTATCCGCAACGTGTCCGCTTCCTCCACATTCGACCAAGAGGAGGACGTTCTCAGCGATGGAGATGAAGTCAATTTCCCTCCTGATACCAAACTCTTTGTGGGTAACCTTCCTTTCAGTGTCGGCAGTTCCCAGCTTGACGGTTTATTCGGAAGCGTTGGAAATGTACAGATGGCAGAGGTGATATATGACAAGGAGACTGGAAGAAGCCGAGGTTTCGGTTTTGTGACGATGTCGACTCCTGATGAAGTGGACGCGGCTGTTCAAAAGTTCAATGGTTATGAACTTGAAGGAAGGCCATTGAGGGTGAATTCTGGACCACCGCCCCCAAAGGATAACTATGGCTCTCCGAGAGTTGGCAGATTTAGTTCAAGTTTTAATGATGAAAACCGTCTCTATGTGGGGAACCTTTCATGGGGTGTCGATAATTCATTGCTGGAATCCTTTTTTAGCGAGGTAGGAGATGTTGTAGAAGCCAGAGTCGTCTATGACAAGGAAAGTGGTAGATCAAGAGGATTTGGCTTTGTGACTTACAGTTCTGCAGAAGCTTTCAACAAGGCCATCGAGTCCTTGGACGGTGTGGACCTTGATGGTAGACCAGTTCGGGTCTCTCAGGCAGCTCCAAGGCCAAGGAGGCAATTTTGA 858 0.4825 MSTSAASLALPSRHLNPRTQSLCSTQPATDYVHLVSSISLGLRSKLISAPSSSFLNSDCRTRYQIQTMSSRFIRNVSASSTFDQEEDVLSDGDEVNFPPDTKLFVGNLPFSVGSSQLDGLFGSVGNVQMAEVIYDKETGRSRGFGFVTMSTPDEVDAAVQKFNGYELEGRPLRVNSGPPPPKDNYGSPRVGRFSSSFNDENRLYVGNLSWGVDNSLLESFFSEVGDVVEARVVYDKESGRSRGFGFVTYSSAEAFNKAIESLDGVDLDGRPVRVSQAAPRPRRQF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01614 285 Gene3D - 195 285 IPR012677 -
Pte18g01614 285 Gene3D - 74 194 IPR012677 -
Pte18g01614 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Pte18g01614 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 272 IPR000504 GO:0003723
Pte18g01614 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Pte18g01614 285 SUPERFAMILY RNA-binding domain, RBD 95 194 IPR035979 GO:0003676
Pte18g01614 285 SMART rrm1_1 102 175 IPR000504 GO:0003723
Pte18g01614 285 SMART rrm1_1 202 275 IPR000504 GO:0003723
Pte18g01614 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Pte18g01614 285 SUPERFAMILY RNA-binding domain, RBD 197 284 IPR035979 GO:0003676
Pte18g01614 285 PANTHER OS02G0815200 PROTEIN 41 282 - -
Pte18g01614 285 MobiDBLite consensus disorder prediction 169 190 - -
Pte18g01614 285 CDD RRM2_NsCP33_like 202 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01614 Pte-Chr18 27614145 27616773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01614 100 284 Eukaryotic Initiation Factors Gene Family AT4G34110 35.676 4.26e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01614 - - cave:132192120 319.701