Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01597 ATGGGACGGGCTCCTTGCTGTGACAAGGCAAACGTAAAGAAGGGGCCATGGTCTCCTGAAGAAGATGCAAAACTCAAAGATTACATAGAGAAAAATGGAACAGGAGGGAATTGGATTGCTCTTCCCCAAAAAGCTGGTTTAAAAAGATGTGGAAAAAGCTGTAGATTGAGGTGGCTCAACTATCTTAGGCCTAACATTAAACACGGGGATTTTTCTGATGAAGAAGATAAGATCATTTGCGGTCTCTACGCTAGCATCGGAAGCAGGTGGTCTATTATAGCAGCTCAGTTACCAGGAAGAACTGACAATGATGTGAAGAACTATTGGAACACCACGCTCAAAAAAAAAGTAATGAACATTGTTCCTCTCTCTCAGAAGAAACTTCAAGGGGCTACCTTCTCATCTATTCTTCAAACAAATTCATCAGCCTCCCATTCGTCCTCATCATCAACTTCACCGTTGTCATTCAAAGAGAGTAGCAACTCATTTTATAAACTAGGCGCACCGTCTTTCACATGCCCCAGTAATTCCATATCATTCTCACCGAGCCCCATGAACAGCAATTCTTCTAGTTTTGCTAACTCTGTGATCCAAGAAAATTATCTGTGTGCCCCTTCCAGTTATCAAGTCAAAGACAGCCTCATGTTTGGTGGTGAAGGGAGTTGCAGCTCTGATGGTAGCTGCAGTAATCAGATACTCCCAGGCCAAGGAGTAGAATATGTATATGCATGCGGTGGTGATGGGATTAAAGCTGAGCAAACGGATCAACTGAACTACTTGAACAGTGGAGTTCAAGAAACCCAGGAATTAATGTTTTTGAATGGATGTAACATGAGCGTGTGGACAGATAAGCAAAATGAGATGTGGGGAGAAAACCCATCAGATTATGGTCTACAAGAGATTAAACAGCTAGTACGCACTAGTGGTGGCAACAACTTTTTGTTTGATGAAAATAAAACTGGGCAAAGTGGCTTGTACTACTGA 984 0.4228 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDKIICGLYASIGSRWSIIAAQLPGRTDNDVKNYWNTTLKKKVMNIVPLSQKKLQGATFSSILQTNSSASHSSSSSTSPLSFKESSNSFYKLGAPSFTCPSNSISFSPSPMNSNSSSFANSVIQENYLCAPSSYQVKDSLMFGGEGSCSSDGSCSNQILPGQGVEYVYACGGDGIKAEQTDQLNYLNSGVQETQELMFLNGCNMSVWTDKQNEMWGENPSDYGLQEIKQLVRTSGGNNFLFDENKTGQSGLYY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01597 327 Gene3D - 70 148 - -
Pte18g01597 327 FunFam Transcription factor RAX3 7 68 - -
Pte18g01597 327 CDD SANT 71 113 IPR001005 -
Pte18g01597 327 Gene3D - 7 68 - -
Pte18g01597 327 PANTHER OS09G0431300 PROTEIN 1 303 - -
Pte18g01597 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pte18g01597 327 CDD SANT 16 62 IPR001005 -
Pte18g01597 327 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte18g01597 327 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte18g01597 327 SMART sant 13 64 IPR001005 -
Pte18g01597 327 SMART sant 67 115 IPR001005 -
Pte18g01597 327 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pte18g01597 327 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte18g01597 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte18g01597 327 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01597 Pte-Chr18 27445617 27447772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01597 1 119 MYB Transcription Factor Family AT5G65790 88.235 5.42e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01597 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01597 K09422 - qsa:O6P43_010254 392.889