Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01594 ATGGCTGACTCTTCTGTTCCCGTGGAAGATGAAGTTGGCTACATCGAACTCCAACAAGAAGAAGAAGGAGAAGGAGAAGAAGAAGAAGAACAGGTAACAGATAATTACGAGATTGGTGAATACTACGATATTTCCGTCCAGTCTTCTGGGGTTTCTGGAGATGCTCTTTCAGCGTCATATCCGATTAGGTCGAATGCTGTTATAGACTTGGAGAATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAAACAAGCGAAGAAGGATTGAACCCTGTAGCTCTACTGGAAACTTATGCAGCCAAGAGCATGAACGGAATTGGAATGAAATCGATGGCTTGTTTTGCCCAATTTGCATGGATGCTTGGACCACTGAAGGCGACCACCATTTGTGTTGCCTTCCTTGCGGACATTTGTATGGCATGTCTTGCATTAGAAAATGGCTACAACAACGTCAAAGTTCTGGAAATTGTCCTCAATGTAATAGAAAATGCAAAATGAAGGATGTGAGAAAACTCTTTGCACCAAGGATAGTTGCTATTGATGAAGAATCACAGAAGAGGATTCGATCATTAGAGATTAAATGTGCTTCTCTTGAGAAAAAGGATGTTGAATGGCGTAATAGAGAAGCAGAATGGGAAAAGGCAAATGCTGAATGGCGAGCTAAACTACAGGAAATTTCAAAGAAAATCACTTGTTTGGAGTATGAAAAGGACGAGTTATGTCAATTACGTTTTCAGAGACTTATGGACAGTCAAAGAAAGCCTGTATCTGGACAGGATGGTGGCTCAAGAACTTATGCACAAGGATCTTGTTGCAATTTCAAGTTAGAGAATGTAATTTGCCTGGACGGTGCACGTTTACTTGATATAGATGCTTCTAGTCAAATTATGTTGATAGCTCGGAGACCACCTCCGACTGTCCAATGTCACAAGCTCACCAAGATGAGCTTAATACCTCCACATGAAGTGGAAGACATTTTACTGCCGGCTGATACGAATTCTATTAAGGATATACACTTTTCTCCTAGCAATGGTAGATTGGCTCTTTTTGCTTCCCTAGGGAAGAAATTGTCTGTTATCAGCTTGGAAAGCAACAATATTGTTCTTACTTATAATTTAGAGACTCCTGCTTGGTCATGTTCATGGGATCTCAATAATTCCAATTACGTCTATGCTGGACTACAGAATGGTTCACTGTTGGAATTCGATTTGCGTCAAACTGCAAGGCCATTGAAATCTGTGAAAGGATTGACAAACAACCCTATTCATACTGTGCAATCCTTTTTCCAAGATTCAACTGTAGCACCAACTGAGAAAACTATCTTATCTGCTTCAGCTATTGGGCTTTGCCAGTGGACCCTTGCCGGTGGCATGGAAGGGCCGCAATTGATCCCGGACATAGAGAATCAAGGAGTTTGTATATCCCTTGCGTATTCTACTGGCTCTGGTGACATAGTGGCTTCATATCGTCCTAAAATCGACTTGTCCGATGAGATGCTTTCTTCCCAACCTTCGTCAACTCCATATCAGGCAATTAGACGAGGAATACAAGGATCCCATGTTTCCATCCAGAGAAAGGGCAATCATTTTCAAACTCTCGGTCACACGCGTGCTAGTGTAAGTGATGTGCTTCTTCCAAAATCTGCCATTATTGACACAAAAAATCAGAGCCGATTATTTGCATCGGAAGACAGTGTGACCGGTGAATTAGTTTTCCAGGATTTACCCTCTTTTACAGTTTTTCAGCGTTATCAATTACTAGAAAATCCAATGCGAGATGTGAAGTACTCTCTTTTTGGCAGCCAATGCTTGATTGGGTGTCTGAGTGGAGAATGTTTGCACGTTTTGAGTGCCAAACTTCCATAA 1905 0.4131 MADSSVPVEDEVGYIELQQEEEGEGEEEEEQVTDNYEIGEYYDISVQSSGVSGDALSASYPIRSNAVIDLENEVEEEEEEEEEEEEEEEEEEEEKGNKRRRIEPCSSTGNLCSQEHERNWNEIDGLFCPICMDAWTTEGDHHLCCLPCGHLYGMSCIRKWLQQRQSSGNCPQCNRKCKMKDVRKLFAPRIVAIDEESQKRIRSLEIKCASLEKKDVEWRNREAEWEKANAEWRAKLQEISKKITCLEYEKDELCQLRFQRLMDSQRKPVSGQDGGSRTYAQGSCCNFKLENVICLDGARLLDIDASSQIMLIARRPPPTVQCHKLTKMSLIPPHEVEDILLPADTNSIKDIHFSPSNGRLALFASLGKKLSVISLESNNIVLTYNLETPAWSCSWDLNNSNYVYAGLQNGSLLEFDLRQTARPLKSVKGLTNNPIHTVQSFFQDSTVAPTEKTILSASAIGLCQWTLAGGMEGPQLIPDIENQGVCISLAYSTGSGDIVASYRPKIDLSDEMLSSQPSSTPYQAIRRGIQGSHVSIQRKGNHFQTLGHTRASVSDVLLPKSAIIDTKNQSRLFASEDSVTGELVFQDLPSFTVFQRYQLLENPMRDVKYSLFGSQCLIGCLSGECLHVLSAKLP* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01594 634 Gene3D - 300 505 IPR015943 GO:0005515
Pte18g01594 634 ProSiteProfiles Zinc finger RING-type profile. 128 174 IPR001841 -
Pte18g01594 634 Coils Coil 194 214 - -
Pte18g01594 634 PANTHER RFWD3 PROTEIN 35 631 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pte18g01594 634 MobiDBLite consensus disorder prediction 1 34 - -
Pte18g01594 634 Coils Coil 222 249 - -
Pte18g01594 634 CDD mRING-C3HGC3_RFWD3 124 186 - -
Pte18g01594 634 MobiDBLite consensus disorder prediction 71 92 - -
Pte18g01594 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 202 IPR013083 -
Pte18g01594 634 Pfam Ring finger domain 128 174 IPR001841 -
Pte18g01594 634 MobiDBLite consensus disorder prediction 62 104 - -
Pte18g01594 634 MobiDBLite consensus disorder prediction 14 34 - -
Pte18g01594 634 Coils Coil 63 101 - -
Pte18g01594 634 SUPERFAMILY RING/U-box 118 180 - -
Pte18g01594 634 SUPERFAMILY WD40 repeat-like 341 626 IPR036322 GO:0005515
Pte18g01594 634 SMART ring_2 128 173 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01594 127 175 C3H Transcription Factor Family AT1G51930 46.000 3.19e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01594 K15691 - qsa:O6P43_006620 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01594 18 27395519 27399656 Pte18g01594 18 27395519 27399656 RCT