Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01589 ATGGAAGCTAAAGATGACCAAATCATAGGGTGCAAGGATAGCGTCACACAAATCATGAAAAGAAAACGAACCAAGCGACAAAGGGGGCCGAGCCCTCTCAGGCTAGGCCCGCTAGGCATGGCTTATTCAAGCACTTCATCTAGCGGTGGAAGAACCAGCGATTGCTACGATTCTGGTACTGGCTATGATCGTGCTACAACTTCAACCGTGGCTACCTCAGATGAATTCAGAGAGAGGAGTACGGAAGAAGAGGAGGATATGGCGAACTGTTTGATTCTTTTGGCTCAAGGTCAACGGAGTACTCAACAACGTAACCGAAAAGTCTCCGAGATCCCAGGCACTGTTGCAATATCGACTGCAGGTAGGAACAAAAAGGACGCAGCAGCAACTGGGCTATATGCTTACCAGTGCAAGACGTGTAACAAGTGCTTCCCTTCATTTCAAGCTCTTGGTGGGCATAGAACGAGTCACAAGAAACAAAAAACGATGGTGAACACAGATCAAGAAAAGCAATCAGCAGGAAGTGGTTCCTTGATTGATCAAGAGAATGATATTTACAGTGACACCACGACAATCACCAATCTTTCATTACGGATGTCAAATGGGGCTTTGTTCAGCAGTGGCAATAGTAATAATAAACATAAACTTCACGAGTGTTCGTTGTGTGGTGCAGTATTCTCATCAGGACAAGCCTTAGGGGGTCACATGAGGAGGCATCGACCATTTGTCAACAACACTTGCACAACATCTACGAGAGCTGGTACGACTGGTTTGGAGGGTACCGAGTCCTCAAAAGATAGGAATATGTTGAAGTTAGATCTTAATCTTCCGGCCCCAGAAGAGGATCACAGAGACAAAAAGTTCACCTTTCCACCCAAAGAACAAGTGCTACTCCTTTCTGCAACTCCTTTGGTGGATTGTCCATTGTAG 930 0.4581 MEAKDDQIIGCKDSVTQIMKRKRTKRQRGPSPLRLGPLGMAYSSTSSSGGRTSDCYDSGTGYDRATTSTVATSDEFRERSTEEEEDMANCLILLAQGQRSTQQRNRKVSEIPGTVAISTAGRNKKDAAATGLYAYQCKTCNKCFPSFQALGGHRTSHKKQKTMVNTDQEKQSAGSGSLIDQENDIYSDTTTITNLSLRMSNGALFSSGNSNNKHKLHECSLCGAVFSSGQALGGHMRRHRPFVNNTCTTSTRAGTTGLEGTESSKDRNMLKLDLNLPAPEEDHRDKKFTFPPKEQVLLLSATPLVDCPL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01589 309 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Pte18g01589 309 SMART c2h2final6 135 157 IPR013087 -
Pte18g01589 309 SMART c2h2final6 217 239 IPR013087 -
Pte18g01589 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Pte18g01589 309 MobiDBLite consensus disorder prediction 1 61 - -
Pte18g01589 309 Gene3D Classic Zinc Finger 195 270 - -
Pte18g01589 309 Gene3D Classic Zinc Finger 120 189 - -
Pte18g01589 309 MobiDBLite consensus disorder prediction 40 61 - -
Pte18g01589 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 239 IPR013087 -
Pte18g01589 309 Pfam C2H2-type zinc finger 217 240 - -
Pte18g01589 309 Pfam C2H2-type zinc finger 134 160 - -
Pte18g01589 309 SUPERFAMILY beta-beta-alpha zinc fingers 135 239 IPR036236 -
Pte18g01589 309 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Pte18g01589 309 PANTHER ZINC FINGER PROTEIN ZAT5 28 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01589 Pte-Chr18 27369810 27371376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01589 15 307 C2H2 Transcription Factor Family AT5G03510 38.889 1.15e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g01589 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01589 - - vvi:100252049 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01589 18 27369810 27371376 Pte15g01080 15 8089463 8091495 RCT
Pte18g01589 18 27369810 27371376 Pte18g01589 18 27369810 27371376 RCT
Pte15g01080 15 8089463 8091495 Pte18g01589 18 27369810 27371376 RCT
Pte15g00476 15 3408114 3409517 Pte18g01589 18 27369810 27371376 RCT
Pte18g01589 18 27369810 27371376 Pte15g00476 15 3408114 3409517 RCT