Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01581 ATGACCAAGCAAAATCCTCTATATATAATAACCGACCCTAGCTTCATCATAAAACCCTCCTTGCACTGCACTCAGTCTCATGATGTAATGGATTTGCGGATTGGTGACGCGAATTTATCGGGAGCACTTACTTGGATGCACAGAATGAAACGAAAGTTAGATTCTCGGCTGTTGGAAAGTCACTCCTGTGATTCAGTCTCTCGTAGTGAGGTTTCTGAGATTGTAGCAACTCAGAAAGAGTCACAACCACTGATTTCGGAGAATACGAGCTGCAAAAGGTTCAAAGGGTCCGTGGTAAATGGTTATATTGTGTATACGAGGAAGTCAAGAGTTGATGCCTGTAATGAATTTCATGATGATGAGAAAAGAGAGAGAGTTTTGAATTGTGGTGAGCCCAATATCAATGGACACTCATCCTTTGTTAATGATGGAGGGGATAAACAGTTACAAAATATGAAGCTGAATGCACACAATTGCGAATCCATATATCTGGAGGAGTCTAAGAACGAGCACGCGCAGTCTCAAGTGGAGAATGCAACTGCTAAAGTAGAAGAGAATCGGGTAATTTCTGTTACTGGCATGCCTAGTGAAGTTAATGGACTGCCGCCAATTAGGATATTAGGGCGATACAGGCCGAGACGGAAGCTTGAGTCGATAAAGAGTATATTAATTGAACCAAAACTTGTTGGCGCAAATTCAATGACTGCCTCGACAAAGATTGTCTTCAACAGGAAGCCTTTGACTTGCAAGGAGCTCTTCGACACTGGTTTGCTTGATGGTGTTCCAGTGGTTTACATGGGTGGCAAGAAGGTATCAGGTCTCCGAGGCATTATTAGAGATGGGGGTATATTGTGCTCGTGTTCTTTTTGCAATTGGCGCTGTGTAATACCACCTTCCCAGTTTGAGATTCATGCCTGTAAAGCATACAAACGTGCAGCAGAATATATTTGCCTTGAGAATGGGAAGAGTCTTCTTGAGTTATTAAGAACTTGCAGAGGGGCACCATTGCAAGAGTTGGAGGCAACTGTACAAAAAGTAATTACCTCACCACCAGAAGAAAAATATTTCACTTGTAAAAGATGCCGAGTATCATTCCCTCCTGCATGTGTGACTAGAGTGGGATCGATGTGTGATTCTTGTGCTGAGTCTGAGATAAAATCTCAAGTCAGCCTGATCCAGCATGATGGCATCAATACCAGGTCACCTGACCCAATATCAGTGCCAACGATCTCTGCTAGTTCAATGCTGCCTATGGCCCAACAAGTTAAGATGCAGTTGAAGACTAGAGAAAGATCATCAAAATTGGTTACTGCCACAACGTCTCCAGAGAGTGCTCCAGTGTCTGTTCCATCTCGGAAGAAGCGTATATGGAAGAAGAAAAAGTCATCTAAGAAAACTATTAGATTGAAGTCATCCAAAAGTAGTTCAAAAAATTCACAAAATAAGACCCAATGGAGAGTTACTAAAAAGCACCAGAGGCTGCATAGGTTAGTTTTTGAGAAAGATGGACTGCCAGATGGAACAGAAGTAGCCTATTATGCACGAGGCCAGAAACTGCTTGTGGGATACAAAATGGGATCTGGAATTCTTTGTCAATGCTGCAATTGCGAGGTCAGCCCCTCATTATTTGAAGCCCATGCAGGGTGGGCTTCTCGTAGGAAACCTTATGCATACATTTACACTTCCAATGGGGTTTCCTTACATGAATTAGCTATCTCTCTCTCTAGAGGTCGTAAGTTCTCTGCGAAGGACAATGATGACCTATGCATAATTTGTTGGGATGGTGGGAAGTTGGTCCTTTGTGATGGGTGTCCAAGAGCATTCCACAAAGAATGTGCCTCTTTATCAAGTATTCCTCGCGGTAACTGGTATTGTCAGTACTGCCAGAATATGTTTGAACGAGAGAAGTTTGTGGAACATAATGAAAATGCTGTTGCAGCTGGAAGAGTTGCAGGAGTGGATTCTATAGAGCAAATAAGTAAGAGATGTATTCGCATTGTAAAGAACATTGAAGCTGAGCTTAGTGGATGTATTTTGTGTAGGGGTTATGACTTCAGCAAATCTGGATTTGGTCCTCGCACAATCATACTCTGTGATCAGTGTGAGAAGGAATATCACGTTGGCTGTTTACGAGATCACAAAATGGCATATCTAAAGGAGTTACCAAAAGGGAAGTGGTTTTGTACTCCTGATTGCTCCACAATAAACATGACCTTGAGTAAGCTGCTTGATCGTGGAGCTGAGAAACTTCGAGACTCTTTGTTGTATGTAATAAAGAATAAGATGGAAGAAAAAGGCTTGGGAAATCTACATAATATTGACGTTAGGTGGAGAATACTTAATGGAAAAATTGCTTCTCCTGAAAACAGGCCTCTGCTTTCAGAGGCTGTGTCTATCTTTCATGGATGTTTTGATCCTATAGTTGACCCAATGAGTGGTCGTGATCTTATTCCGGCTATGGTCTATGGAAGAAATGTAAGGGGCCAAGAATTTGGCGGAATGTACTGTGCGATATTGATAGTCAACTCAGTCGTGGTATCTGCTGGACTATTTCGAATTTTTGGCAGTGAAATCGCAGAAATGCCATTAGTTGCTACCCGTAGTGGTCACCATGGAAAGCAGCCTCGTGCTCCCAGCTGCCGAAGAGGCAGAGTCAATATGGACAGATAA 2670 0.4247 MTKQNPLYIITDPSFIIKPSLHCTQSHDVMDLRIGDANLSGALTWMHRMKRKLDSRLLESHSCDSVSRSEVSEIVATQKESQPLISENTSCKRFKGSVVNGYIVYTRKSRVDACNEFHDDEKRERVLNCGEPNINGHSSFVNDGGDKQLQNMKLNAHNCESIYLEESKNEHAQSQVENATAKVEENRVISVTGMPSEVNGLPPIRILGRYRPRRKLESIKSILIEPKLVGANSMTASTKIVFNRKPLTCKELFDTGLLDGVPVVYMGGKKVSGLRGIIRDGGILCSCSFCNWRCVIPPSQFEIHACKAYKRAAEYICLENGKSLLELLRTCRGAPLQELEATVQKVITSPPEEKYFTCKRCRVSFPPACVTRVGSMCDSCAESEIKSQVSLIQHDGINTRSPDPISVPTISASSMLPMAQQVKMQLKTRERSSKLVTATTSPESAPVSVPSRKKRIWKKKKSSKKTIRLKSSKSSSKNSQNKTQWRVTKKHQRLHRLVFEKDGLPDGTEVAYYARGQKLLVGYKMGSGILCQCCNCEVSPSLFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSRGRKFSAKDNDDLCIICWDGGKLVLCDGCPRAFHKECASLSSIPRGNWYCQYCQNMFEREKFVEHNENAVAAGRVAGVDSIEQISKRCIRIVKNIEAELSGCILCRGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPKGKWFCTPDCSTINMTLSKLLDRGAEKLRDSLLYVIKNKMEEKGLGNLHNIDVRWRILNGKIASPENRPLLSEAVSIFHGCFDPIVDPMSGRDLIPAMVYGRNVRGQEFGGMYCAILIVNSVVVSAGLFRIFGSEIAEMPLVATRSGHHGKQPRAPSCRRGRVNMDR* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01581 889 SUPERFAMILY FYVE/PHD zinc finger 582 633 IPR011011 -
Pte18g01581 889 MobiDBLite consensus disorder prediction 867 889 - -
Pte18g01581 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 672 IPR013083 -
Pte18g01581 889 MobiDBLite consensus disorder prediction 431 447 - -
Pte18g01581 889 ProSitePatterns Zinc finger PHD-type signature. 589 628 IPR019786 -
Pte18g01581 889 MobiDBLite consensus disorder prediction 421 487 - -
Pte18g01581 889 PANTHER AUTOIMMUNE REGULATOR 58 873 - -
Pte18g01581 889 Pfam Tify domain binding domain 525 572 IPR032308 -
Pte18g01581 889 Pfam Tify domain binding domain 276 331 IPR032308 -
Pte18g01581 889 ProSiteProfiles Zinc finger PHD-type profile. 586 631 IPR019787 -
Pte18g01581 889 MobiDBLite consensus disorder prediction 452 471 - -
Pte18g01581 889 Pfam PHD-finger 589 630 IPR019787 -
Pte18g01581 889 Coils Coil 882 889 - -
Pte18g01581 889 Coils Coil 164 184 - -
Pte18g01581 889 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 575 652 - -
Pte18g01581 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 735 IPR013083 -
Pte18g01581 889 SMART PHD_3 588 629 IPR001965 -
Pte18g01581 889 SMART PHD_3 676 733 IPR001965 -
Pte18g01581 889 SUPERFAMILY FYVE/PHD zinc finger 670 730 IPR011011 -
Pte18g01581 889 CDD PHD1_AIRE 588 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01581 Pte-Chr18 27311161 27319734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01581 236 867 PHD Transcription Factor Family AT2G36720 55.093 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte18g01581 TDBD 5.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01581 - - qsa:O6P43_006593 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01581 18 27311161 27319734 Pte18g01581 18 27311161 27319734 RCT