Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01576 ATGGATAATGACGCAGGATCTTCTTCTCCATCTTCAGTGTCCTATGTCACTCCACTTCTCATCTCCTTGATTGGGATTGCTTCGTCTTCTTTGGCAATAATACTTTACCATCTCATTCTCGTAAATTTATGCCTCAGGTCAGACCAACAACAAAACCAGGAGAGCAACACCAACGACACAAGGCAACGAGATGAATTAGGTAGAAGCCAATGGGATATGGGGTTAGATGAAGATATCCTTAACGCAATACCAATTTTCTCACACTCAAATCAAAAGGACAAACTACTTCATGTGGATCAAAGTGAATGTATAATTTGCTTGGGTGGATTAGAACATGGAGACAATGTGCGAATGTTGCCGACCTGTACGCATGTCTTTCATGTTTCATGCATTGATAAATGGTTCACGCAACATTCGAGATGTCCACTGTGTCGTTGTCCCGTAGTTGTGCCAGTTCTTGATCCAGAATATTGTGCAATATCATTACCTCCAGAAAGTGACCATGGTGGACAATTTGATGTCGTTTTAGACTTACCTGCAAATGATAATGAGGTTCACGCTCAACAAAAAGATGGTAAGTCTGGTGATTCCAGTGCTTCCTGTTCGAGTTCATCAGGGGTGAATCTATCAATGGGTGGATTACTAAAACATTCTTTGTCATTAAAGTTGACAGGAGATCAAGAAAGAGCTCAAGCTCCGGTTACATGTTTGAAAAGATCTTTGTCCATGGACCCATGTCGTTATTATATTGGCAGAATAAACATGCAATGGGATCGTGAAAAAGCTTGCTCTTGTTCAAAAGAACTGGTTTTGCAGAACAACACCTTTGAGCCCGCAAGATCAACAAGAACATTTGAACGTGTAACTAATATGCTTGTTGGATCTTCCTCCCAAATGCGCAACAATAGAAGCACCGCCCCTGCATCTACAATTCTTCCGATTTAA 945 0.4106 MDNDAGSSSPSSVSYVTPLLISLIGIASSSLAIILYHLILVNLCLRSDQQQNQESNTNDTRQRDELGRSQWDMGLDEDILNAIPIFSHSNQKDKLLHVDQSECIICLGGLEHGDNVRMLPTCTHVFHVSCIDKWFTQHSRCPLCRCPVVVPVLDPEYCAISLPPESDHGGQFDVVLDLPANDNEVHAQQKDGKSGDSSASCSSSSGVNLSMGGLLKHSLSLKLTGDQERAQAPVTCLKRSLSMDPCRYYIGRINMQWDREKACSCSKELVLQNNTFEPARSTRTFERVTNMLVGSSSQMRNNRSTAPASTILPI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01576 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 149 IPR044675 -
Pte18g01576 314 SUPERFAMILY RING/U-box 102 151 - -
Pte18g01576 314 Pfam Ring finger domain 102 145 IPR001841 -
Pte18g01576 314 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Pte18g01576 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 150 IPR013083 -
Pte18g01576 314 SMART ring_2 103 144 IPR001841 -
Pte18g01576 314 MobiDBLite consensus disorder prediction 185 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01576 Pte-Chr18 27259058 27260135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01576 10 170 C3H Transcription Factor Family AT1G72220 35.028 4.48e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01576 - - qsa:O6P43_006588 148.288