Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01574 ATGGCGGTTTCTTCGTCTGTCTCTGCCGTCCCGGCATCTATTTACGTCGGTGACCTTCATCCGGACATCAGCGATGACGAGCTGTTTGATGCATTCTTCGAGTTCAACAGTCTCGCGTCTGTACGTGTCTGCAGGGACCCATCTACTTCCAGGTCACTCTGTTATGGCTATGTGAACTTCATCTCATCTCAAGACGCAATACGGGCAATTGAGGTGAAGAACAACTCGTTATTAAAAGGTAAGATGATAAGAGTCATGTGGTCAAATCGTGATCCAGATGCAAGAAAAAATGGCATTGGAAATGTGTTTGTTAAGAACTTGCCTGAATCAACTGATAACTCAAGATTACAAGAATTGTTTCAAAAGTTTGGCAATATAATTTCTTGCAAAGTAGTCATGTATGAGGATGGCAAGAGCAAAGGTTATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCCAATTCTGCCATTGAAAAGCTGAACGGATCTACTGTTGGCGATAGGCAAATATATGTAGGCAGATTTATGAGGAAAAGTGATCGGGTTTCAAGCAGCCATGATATTAGATATACAAATTTGTACGTGAAAAATTTGGATCCAGAGGTTACAGAAGAACTGCTGCAGAAGAAGTTCTCAGCATTTGGAAATATTGTTAGCTCGGTTGTTGCAACAGATGAGAATGGTGCATCTAAAGGTTTTGGATTTGTAAACTTTGAGAATCCGGATGATGCTAGACAAGCAATGGAAGCAATGAATGGAGCACAACTTGGGTCAAAGACTTTGTATGTTGCAAGGGCGCAAAAGAAAGCTGAGCGTGTTCAAATTGCGAGGCATCAGTTTGAGGAGAAGCGTAAGGGTTCAAATCTTTATGTGAAGAACATCGGGGATGGTGTTACTGATGAAGATCTTCGAAAGCACTTTAGCACTTGTGGCACAATTATTTCGGCAAAACTTATGCGAGATGAAAAAGGAATTAGCAGGGGATTTGGATTTGTATGCTTCTCTTCTCCTGAGGAGGCCAATATGGCTATTGTCACTTTCTACGGTGCTATGTTTCATGGGAAACCACTGTATGTTGCTATTGCTCAGAGAAAAGAGGATAGACTAGAAAAATTGAAGAGTCTCTATGCACTGGCAGCACGCCATTTGCCTGGATTACCTGGACCGTCAATTGCTGTAATCTCCGGTGACTATCCTTACTATTACTCAGCGCCTGGTCTTGTTTCTCGTATTTCTCATCTACCAGGATTGCTGTCTCCACCTCTGGGATTTAGGCCTGGATGGAGGACAATAACAACTAGTCAGCAGCGAATTAATCATGCTAAGTGTGAAATGGAGAAAGGATCTGACATCTCATCTGTATCTTCCAATTCGGAAGGAGGGTCGCAGGGATCACAAATGCTGCATAACCAACTTGCAGCTGCTTCTCCTGAGCAGCAGAGACAGATACCTGTCAAGCATCTCCTCCCACTTGTCCGGAAACATCAGATATACCGTTTTTAG 1503 0.4285 MAVSSSVSAVPASIYVGDLHPDISDDELFDAFFEFNSLASVRVCRDPSTSRSLCYGYVNFISSQDAIRAIEVKNNSLLKGKMIRVMWSNRDPDARKNGIGNVFVKNLPESTDNSRLQELFQKFGNIISCKVVMYEDGKSKGYGFVQFESEDSANSAIEKLNGSTVGDRQIYVGRFMRKSDRVSSSHDIRYTNLYVKNLDPEVTEELLQKKFSAFGNIVSSVVATDENGASKGFGFVNFENPDDARQAMEAMNGAQLGSKTLYVARAQKKAERVQIARHQFEEKRKGSNLYVKNIGDGVTDEDLRKHFSTCGTIISAKLMRDEKGISRGFGFVCFSSPEEANMAIVTFYGAMFHGKPLYVAIAQRKEDRLEKLKSLYALAARHLPGLPGPSIAVISGDYPYYYSAPGLVSRISHLPGLLSPPLGFRPGWRTITTSQQRINHAKCEMEKGSDISSVSSNSEGGSQGSQMLHNQLAAASPEQQRQIPVKHLLPLVRKHQIYRF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01574 500 CDD RRM3_I_PABPs 190 269 - -
Pte18g01574 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pte18g01574 500 Coils Coil 263 283 - -
Pte18g01574 500 MobiDBLite consensus disorder prediction 449 466 - -
Pte18g01574 500 SUPERFAMILY RNA-binding domain, RBD 101 270 IPR035979 GO:0003676
Pte18g01574 500 SMART rrm1_1 288 360 IPR000504 GO:0003723
Pte18g01574 500 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pte18g01574 500 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pte18g01574 500 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pte18g01574 500 CDD RRM2_I_PABPs 98 174 IPR045305 -
Pte18g01574 500 Gene3D - 4 100 IPR012677 -
Pte18g01574 500 SUPERFAMILY RNA-binding domain, RBD 284 369 IPR035979 GO:0003676
Pte18g01574 500 FunFam Polyadenylate-binding protein 182 276 - -
Pte18g01574 500 FunFam Polyadenylate-binding protein 97 181 - -
Pte18g01574 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Pte18g01574 500 SMART rrm2_1 13 86 IPR003954 GO:0003676
Pte18g01574 500 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pte18g01574 500 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pte18g01574 500 SMART rrm2_1 288 360 IPR003954 GO:0003676
Pte18g01574 500 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 378 IPR006515 GO:0003723
Pte18g01574 500 FunFam Poly(A) binding protein cytoplasmic 1 like 279 368 - -
Pte18g01574 500 MobiDBLite consensus disorder prediction 446 466 - -
Pte18g01574 500 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
Pte18g01574 500 Gene3D - 180 277 IPR012677 -
Pte18g01574 500 Gene3D - 278 373 IPR012677 -
Pte18g01574 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pte18g01574 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pte18g01574 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Pte18g01574 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Pte18g01574 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Pte18g01574 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pte18g01574 500 CDD RRM4_I_PABPs 286 364 - -
Pte18g01574 500 PANTHER OS02G0815200 PROTEIN 101 269 - -
Pte18g01574 500 Gene3D - 101 179 IPR012677 -
Pte18g01574 500 FunFam Polyadenylate-binding protein 4 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01574 Pte-Chr18 27243068 27247499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01574 10 408 Eukaryotic Initiation Factors Gene Family AT2G36660 61.071 7.37e-178 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01574 K13126 - qsa:O6P43_010206 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01574 18 27243068 27247499 Pte18g01574 18 27243068 27247499 RCT