Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01565 ATGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGATCCTGACAGAAAGATGAAACTGTCCAGAGAACTTGGACTGCAGCCGCGTCAAATTGCTGTTTGGTTTCAGAATAGGCGTTCAAGATGGAAGACTAAACAGCTTGAGAACCTATACGATTCTCTCAAACAAGAGTTTGATGTTATCTCTAGGGAAAAGCTCAAGCTCCAAGAAGAGGTGAAAAAATTGAAGGCGATGCTGAGAAATCAAGCTACAAGAAACCAAGCATCCGCAGCTTACACAGACATCTCGGGTGAAGAGACGACAGTTGAAAGCACTTCAGTTGCTATGGGCATTTCAAGCAGGCGGCGACCAATTATGAGTAATGAAGAAATGGCAGTCGGAAGTTACCTTTTGCCCATGGAGGATTACCATAATACACCTATTTCAACTCCTTACTGGGCAATTAATCTACCTTGTTATCCTCAATGA 465 0.4301 MERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRSRWKTKQLENLYDSLKQEFDVISREKLKLQEEVKKLKAMLRNQATRNQASAAYTDISGEETTVESTSVAMGISSRRRPIMSNEEMAVGSYLLPMEDYHNTPISTPYWAINLPCYPQ* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01565 154 Coils Coil 43 84 - -
Pte18g01565 154 Gene3D - 1 42 - -
Pte18g01565 154 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 97 IPR045224 GO:0003700
Pte18g01565 154 ProSiteProfiles 'Homeobox' domain profile. 1 44 IPR001356 GO:0003677
Pte18g01565 154 ProSitePatterns 'Homeobox' domain signature. 19 42 IPR017970 GO:0000981|GO:0006355
Pte18g01565 154 PRINTS Lambda-repressor HTH signature 15 24 IPR000047 GO:0003677
Pte18g01565 154 PRINTS Lambda-repressor HTH signature 24 40 IPR000047 GO:0003677
Pte18g01565 154 SUPERFAMILY Homeodomain-like 1 54 IPR009057 -
Pte18g01565 154 CDD homeodomain 1 45 IPR001356 GO:0003677
Pte18g01565 154 Pfam Homeodomain 1 42 IPR001356 GO:0003677
Pte18g01565 154 SMART HOX_1 1 48 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01565 Pte-Chr18 27200429 27201252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01565 1 83 Homeobox Transcription Factor Family AT2G36610 67.033 2.24e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte18g01565 Homeodomain 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01565 - - tcc:18598127 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01565 18 27200429 27201252 Pte18g01565 18 27200429 27201252 RCT