Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01557 ATGGAGAGCTCTCGTGGATCTTTCGGTAAATCAAGAGAATCTGGATTGGTAAAGAAACCTCGATTGAATGATGACGCGAATGCCCGAGCTTTTACGCAGCGGCCTTTATCTTCCATGACGAATGCTAGGTTGAGAGCAATTCATAGAGAATCCGAAGGTATTGATGCTGGACGTGGTGGCAATGGCGGCGGAGCCGGAGGCGAAGGATATCATCCTCAGCCACCGCAGCATCAAGAGCTTCTTGTACAATATAGAAATGCACTAGCTGAGCTGACATTTAATTCAAAACCTATCATTACCAACTTGACCATAATCGCTGGCGAGAATCAATATGCTGCTAAGGATATCGTTGCTATGGTTTGCAATAATATACTAGAGGTTCCCAGTGACCAAAAGTTGCCATCTCTCTATCTTCTAGACAGTATTGTAAAGAATATTGGAAGTGATTATATAAAATACTTTGCTGCAAGATTGCCAGAGGTCTACTGCAAGGCATTCAAACAAGTTGATCCTTCTGTTCATGCTAGTATGCGGCATTTGTTTGGAACATGGAAGGGTGTGTTTCCACCTCAGGCACTGCATATGATTGAGAAGGAACTTGGTTTCAATCAAACGGTTAATGGTTCACCTTCAGTAGTTTCCGCAATGAGGACTAATTCTCAGACACAACGTCCTCCTCATAGTATCCATGTGAATCCTAAATACTTAGAAAGACAGCGTCTTCAGCAGACTAGCAAAAATAATCAGCCTTCTCATGAAAATGCATTTACTGAACCTGTTCATCAGAAGAGTTCCATTTTTCCTCATGGTGGCAATGAATATGTTTCTCGAACTTCAGCTTCAGGGATTGGAAGAAGTATCGTTAGAAGTACTGAGATTGGACCTGACAAAGCTTGGTATAAAGCAGGAACTGGCATTGCAGATACATCTGGTCAAAGAAATGGCCTCAATATCAAGCACGGGTTTCCAAATTTTGATGCACATAAATCTTCAAATGCCACTTCTCATATTCATGCGACTCAAAACTTTTCGAAATTAAATACCAGTGGTCTATCAAATAGCTGGAAAAACTCCGAGGAAGAAGAGTTCATGTGGAATAACGTGAATTCTGGACTGAGTGATAATTGTGCCTCTGCTATTTCCAATACATCAACTAAAGATCATTGGACTCCAGATGATGAGGACGATAACAATGAAAATTTGGAGGTTGTAAATCTTCGTAAAGGGAATACCAAACCTGATGTTGGATCGGGCCTTGATAGAGGAACACCCACAGATCAGAAACAAGTAGCAACTCTCGCACGTCATGCACAGTCACCTTGGGCAGCACAGGACACTCACCTAGGTGACTCGGGAATGTATTCATCAACTATTGGTAGGATTGGAAGTAAATCCCAGATAAATTTTTCGCACTCTGGAGATTCAGGAGTTGAGCTGCTATCAAATGCATACACAGTGTCTTCTGGAATCATGGGGCCACGCCAATATCAGTCTGGTGGATCTGCATTGCTCTCTGAGCAATCTCCTGTGCATCAGCATCCTCCATCACCTCCATTGACAGGACGTGCTTTTCAGCCTCAGTTACGAAATTCAAATTGCAAAGATCGTCTGTCATTTCCTAAAACATCTCAAATATCTGCAGGGATGGAATATAAAAATACTCAGGACAGGTCAATGACTTTACCTTCTAGTGCGTCAGTGGGTAGTTGGCAAAAATCAAATACTAAGGTAATGCCTTCCAAAGCACCATCACAAAAAAGACAGCGCAACTCCTCTTCACAGCAGCAGCGGCTAGTAGATTCCAATCAGACAGAGTTTTCTGATATGAAGGAGAAGGCCTCCCTTTCTCAAGTTTCAGACCATGAAACTCAGTCAACGGCAGAGAATTCGGCATCAGAAATTTCAAGTGCATTACATAATGAAACTTCTGAGCCTTCAACTGCTAGTAGTCTGTTAGCTGCAGTCATGAAGAGTGGAATTTTGTCCAGAACTTCAATTACTAGTAGTCCACCTATGAGTCTTCTAGATACAGAAAACCTGCCAATGCAATCAAGACGTTGCACTCAGCCTTTAAGTAGGTCTCCTTCCCAAGATACTTCAGTTCCAATGGTTTATTCACCATCTCCATTACCGTCTTCTTCCATTAATGGCAAAGTTGTTTTTCCAAGCAAATGTCAAAAGAAGGAAGAACATGTATCAGTGGCAGCTGCTCCACCTCCTCCTGCAGCAAGTAGTGGCTTTGTTCAAGCCTCGAATGTCCTGAACAATTCATCAAATCCCATCTCAAACATTTTGAGCTCATTAGTTGCCAAGGGTTTAATATCTGCACAGGCAGAACCTAAGAATGTTGCACCATCTGATATGCTTACTCGACTGCAAGATTATGGTGAAGGTGTATGTTCTAGTACCTCTCAGCCAGTTTCTGTAGTTCCTATTCCAGCGGCTATCCCTTTGTCTATGTCCAAGGATAAGGTATCCTCTCCGGAACAGGATTCAAAAAGCTGTGCTTTATGCTCTCAATCTAGCCCCCCAAAAATAAAAAGCCTCATTGGTTTTGAATTTAAACCAGATGTTCTACGAGAAGTCCATACACCTGTCCTTCAAGAGTTATATGACGATTGTCTTAATTGCAGCATGTGTGGCCTTAGACTTAAATTTCAGGACCAACTGGACAGACACTTGGAGTGGCATGCGCTGAGAGTGCCTCAAGAAAATGATGAGGTGAAGAAATCAAGAAGCTGGTATGGAAACTCTAGTGATTGGGTTTCTGGGAAATCTCAGTTTCCCTCAGAGTCCGAGTGTCCTTCTCTCGAGATATATGGCCAGCAAGTGGATAAAGCGGAGCCAATGGTTGTGCCGGATGAAAGTCAGTGTGTTTGTCCATTGTGTGGTGAACTATTTGAAGATTTCTACAGTCAAGAAAGGGAAAAATGGATGTTCAAAGGAGCTATTTACATGGCTATGAATTCTGGTTTGCACGAGGACTCCACAGGTCCAATTGTACATGCGAAGTGTTTATCCGAAAGTTCCACCATTGACTTGAGAATGTTCAATGGAATTAAAATGGAGGAGGACATATAA 3081 0.4236 MESSRGSFGKSRESGLVKKPRLNDDANARAFTQRPLSSMTNARLRAIHRESEGIDAGRGGNGGGAGGEGYHPQPPQHQELLVQYRNALAELTFNSKPIITNLTIIAGENQYAAKDIVAMVCNNILEVPSDQKLPSLYLLDSIVKNIGSDYIKYFAARLPEVYCKAFKQVDPSVHASMRHLFGTWKGVFPPQALHMIEKELGFNQTVNGSPSVVSAMRTNSQTQRPPHSIHVNPKYLERQRLQQTSKNNQPSHENAFTEPVHQKSSIFPHGGNEYVSRTSASGIGRSIVRSTEIGPDKAWYKAGTGIADTSGQRNGLNIKHGFPNFDAHKSSNATSHIHATQNFSKLNTSGLSNSWKNSEEEEFMWNNVNSGLSDNCASAISNTSTKDHWTPDDEDDNNENLEVVNLRKGNTKPDVGSGLDRGTPTDQKQVATLARHAQSPWAAQDTHLGDSGMYSSTIGRIGSKSQINFSHSGDSGVELLSNAYTVSSGIMGPRQYQSGGSALLSEQSPVHQHPPSPPLTGRAFQPQLRNSNCKDRLSFPKTSQISAGMEYKNTQDRSMTLPSSASVGSWQKSNTKVMPSKAPSQKRQRNSSSQQQRLVDSNQTEFSDMKEKASLSQVSDHETQSTAENSASEISSALHNETSEPSTASSLLAAVMKSGILSRTSITSSPPMSLLDTENLPMQSRRCTQPLSRSPSQDTSVPMVYSPSPLPSSSINGKVVFPSKCQKKEEHVSVAAAPPPPAASSGFVQASNVLNNSSNPISNILSSLVAKGLISAQAEPKNVAPSDMLTRLQDYGEGVCSSTSQPVSVVPIPAAIPLSMSKDKVSSPEQDSKSCALCSQSSPPKIKSLIGFEFKPDVLREVHTPVLQELYDDCLNCSMCGLRLKFQDQLDRHLEWHALRVPQENDEVKKSRSWYGNSSDWVSGKSQFPSESECPSLEIYGQQVDKAEPMVVPDESQCVCPLCGELFEDFYSQEREKWMFKGAIYMAMNSGLHEDSTGPIVHAKCLSESSTIDLRMFNGIKMEEDI* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01557 1026 Pfam CID domain 86 193 IPR006569 -
Pte18g01557 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 79 1011 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pte18g01557 1026 SMART 558neu5 79 201 IPR006569 -
Pte18g01557 1026 MobiDBLite consensus disorder prediction 497 645 - -
Pte18g01557 1026 MobiDBLite consensus disorder prediction 523 645 - -
Pte18g01557 1026 MobiDBLite consensus disorder prediction 243 273 - -
Pte18g01557 1026 SUPERFAMILY ENTH/VHS domain 76 198 IPR008942 -
Pte18g01557 1026 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Pte18g01557 1026 MobiDBLite consensus disorder prediction 243 261 - -
Pte18g01557 1026 ProSiteProfiles Zinc finger C2H2 type domain profile. 875 902 IPR013087 -
Pte18g01557 1026 CDD CID_Pcf11 83 200 IPR047415 -
Pte18g01557 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 877 897 IPR013087 -
Pte18g01557 1026 MobiDBLite consensus disorder prediction 1 75 - -
Pte18g01557 1026 MobiDBLite consensus disorder prediction 684 713 - -
Pte18g01557 1026 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Pte18g01557 1026 Gene3D - 72 201 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01557 Pte-Chr18 27136762 27143342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01557 67 385 C2H2 Transcription Factor Family AT4G04885 37.391 4.95e-52 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g01557 CID 2.4e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01557 K14400 - qsa:O6P43_009520 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01557 18 27136762 27143342 Pte18g01557 18 27136762 27143342 RCT