Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte18g01557 | ATGGAGAGCTCTCGTGGATCTTTCGGTAAATCAAGAGAATCTGGATTGGTAAAGAAACCTCGATTGAATGATGACGCGAATGCCCGAGCTTTTACGCAGCGGCCTTTATCTTCCATGACGAATGCTAGGTTGAGAGCAATTCATAGAGAATCCGAAGGTATTGATGCTGGACGTGGTGGCAATGGCGGCGGAGCCGGAGGCGAAGGATATCATCCTCAGCCACCGCAGCATCAAGAGCTTCTTGTACAATATAGAAATGCACTAGCTGAGCTGACATTTAATTCAAAACCTATCATTACCAACTTGACCATAATCGCTGGCGAGAATCAATATGCTGCTAAGGATATCGTTGCTATGGTTTGCAATAATATACTAGAGGTTCCCAGTGACCAAAAGTTGCCATCTCTCTATCTTCTAGACAGTATTGTAAAGAATATTGGAAGTGATTATATAAAATACTTTGCTGCAAGATTGCCAGAGGTCTACTGCAAGGCATTCAAACAAGTTGATCCTTCTGTTCATGCTAGTATGCGGCATTTGTTTGGAACATGGAAGGGTGTGTTTCCACCTCAGGCACTGCATATGATTGAGAAGGAACTTGGTTTCAATCAAACGGTTAATGGTTCACCTTCAGTAGTTTCCGCAATGAGGACTAATTCTCAGACACAACGTCCTCCTCATAGTATCCATGTGAATCCTAAATACTTAGAAAGACAGCGTCTTCAGCAGACTAGCAAAAATAATCAGCCTTCTCATGAAAATGCATTTACTGAACCTGTTCATCAGAAGAGTTCCATTTTTCCTCATGGTGGCAATGAATATGTTTCTCGAACTTCAGCTTCAGGGATTGGAAGAAGTATCGTTAGAAGTACTGAGATTGGACCTGACAAAGCTTGGTATAAAGCAGGAACTGGCATTGCAGATACATCTGGTCAAAGAAATGGCCTCAATATCAAGCACGGGTTTCCAAATTTTGATGCACATAAATCTTCAAATGCCACTTCTCATATTCATGCGACTCAAAACTTTTCGAAATTAAATACCAGTGGTCTATCAAATAGCTGGAAAAACTCCGAGGAAGAAGAGTTCATGTGGAATAACGTGAATTCTGGACTGAGTGATAATTGTGCCTCTGCTATTTCCAATACATCAACTAAAGATCATTGGACTCCAGATGATGAGGACGATAACAATGAAAATTTGGAGGTTGTAAATCTTCGTAAAGGGAATACCAAACCTGATGTTGGATCGGGCCTTGATAGAGGAACACCCACAGATCAGAAACAAGTAGCAACTCTCGCACGTCATGCACAGTCACCTTGGGCAGCACAGGACACTCACCTAGGTGACTCGGGAATGTATTCATCAACTATTGGTAGGATTGGAAGTAAATCCCAGATAAATTTTTCGCACTCTGGAGATTCAGGAGTTGAGCTGCTATCAAATGCATACACAGTGTCTTCTGGAATCATGGGGCCACGCCAATATCAGTCTGGTGGATCTGCATTGCTCTCTGAGCAATCTCCTGTGCATCAGCATCCTCCATCACCTCCATTGACAGGACGTGCTTTTCAGCCTCAGTTACGAAATTCAAATTGCAAAGATCGTCTGTCATTTCCTAAAACATCTCAAATATCTGCAGGGATGGAATATAAAAATACTCAGGACAGGTCAATGACTTTACCTTCTAGTGCGTCAGTGGGTAGTTGGCAAAAATCAAATACTAAGGTAATGCCTTCCAAAGCACCATCACAAAAAAGACAGCGCAACTCCTCTTCACAGCAGCAGCGGCTAGTAGATTCCAATCAGACAGAGTTTTCTGATATGAAGGAGAAGGCCTCCCTTTCTCAAGTTTCAGACCATGAAACTCAGTCAACGGCAGAGAATTCGGCATCAGAAATTTCAAGTGCATTACATAATGAAACTTCTGAGCCTTCAACTGCTAGTAGTCTGTTAGCTGCAGTCATGAAGAGTGGAATTTTGTCCAGAACTTCAATTACTAGTAGTCCACCTATGAGTCTTCTAGATACAGAAAACCTGCCAATGCAATCAAGACGTTGCACTCAGCCTTTAAGTAGGTCTCCTTCCCAAGATACTTCAGTTCCAATGGTTTATTCACCATCTCCATTACCGTCTTCTTCCATTAATGGCAAAGTTGTTTTTCCAAGCAAATGTCAAAAGAAGGAAGAACATGTATCAGTGGCAGCTGCTCCACCTCCTCCTGCAGCAAGTAGTGGCTTTGTTCAAGCCTCGAATGTCCTGAACAATTCATCAAATCCCATCTCAAACATTTTGAGCTCATTAGTTGCCAAGGGTTTAATATCTGCACAGGCAGAACCTAAGAATGTTGCACCATCTGATATGCTTACTCGACTGCAAGATTATGGTGAAGGTGTATGTTCTAGTACCTCTCAGCCAGTTTCTGTAGTTCCTATTCCAGCGGCTATCCCTTTGTCTATGTCCAAGGATAAGGTATCCTCTCCGGAACAGGATTCAAAAAGCTGTGCTTTATGCTCTCAATCTAGCCCCCCAAAAATAAAAAGCCTCATTGGTTTTGAATTTAAACCAGATGTTCTACGAGAAGTCCATACACCTGTCCTTCAAGAGTTATATGACGATTGTCTTAATTGCAGCATGTGTGGCCTTAGACTTAAATTTCAGGACCAACTGGACAGACACTTGGAGTGGCATGCGCTGAGAGTGCCTCAAGAAAATGATGAGGTGAAGAAATCAAGAAGCTGGTATGGAAACTCTAGTGATTGGGTTTCTGGGAAATCTCAGTTTCCCTCAGAGTCCGAGTGTCCTTCTCTCGAGATATATGGCCAGCAAGTGGATAAAGCGGAGCCAATGGTTGTGCCGGATGAAAGTCAGTGTGTTTGTCCATTGTGTGGTGAACTATTTGAAGATTTCTACAGTCAAGAAAGGGAAAAATGGATGTTCAAAGGAGCTATTTACATGGCTATGAATTCTGGTTTGCACGAGGACTCCACAGGTCCAATTGTACATGCGAAGTGTTTATCCGAAAGTTCCACCATTGACTTGAGAATGTTCAATGGAATTAAAATGGAGGAGGACATATAA | 3081 | 0.4236 | MESSRGSFGKSRESGLVKKPRLNDDANARAFTQRPLSSMTNARLRAIHRESEGIDAGRGGNGGGAGGEGYHPQPPQHQELLVQYRNALAELTFNSKPIITNLTIIAGENQYAAKDIVAMVCNNILEVPSDQKLPSLYLLDSIVKNIGSDYIKYFAARLPEVYCKAFKQVDPSVHASMRHLFGTWKGVFPPQALHMIEKELGFNQTVNGSPSVVSAMRTNSQTQRPPHSIHVNPKYLERQRLQQTSKNNQPSHENAFTEPVHQKSSIFPHGGNEYVSRTSASGIGRSIVRSTEIGPDKAWYKAGTGIADTSGQRNGLNIKHGFPNFDAHKSSNATSHIHATQNFSKLNTSGLSNSWKNSEEEEFMWNNVNSGLSDNCASAISNTSTKDHWTPDDEDDNNENLEVVNLRKGNTKPDVGSGLDRGTPTDQKQVATLARHAQSPWAAQDTHLGDSGMYSSTIGRIGSKSQINFSHSGDSGVELLSNAYTVSSGIMGPRQYQSGGSALLSEQSPVHQHPPSPPLTGRAFQPQLRNSNCKDRLSFPKTSQISAGMEYKNTQDRSMTLPSSASVGSWQKSNTKVMPSKAPSQKRQRNSSSQQQRLVDSNQTEFSDMKEKASLSQVSDHETQSTAENSASEISSALHNETSEPSTASSLLAAVMKSGILSRTSITSSPPMSLLDTENLPMQSRRCTQPLSRSPSQDTSVPMVYSPSPLPSSSINGKVVFPSKCQKKEEHVSVAAAPPPPAASSGFVQASNVLNNSSNPISNILSSLVAKGLISAQAEPKNVAPSDMLTRLQDYGEGVCSSTSQPVSVVPIPAAIPLSMSKDKVSSPEQDSKSCALCSQSSPPKIKSLIGFEFKPDVLREVHTPVLQELYDDCLNCSMCGLRLKFQDQLDRHLEWHALRVPQENDEVKKSRSWYGNSSDWVSGKSQFPSESECPSLEIYGQQVDKAEPMVVPDESQCVCPLCGELFEDFYSQEREKWMFKGAIYMAMNSGLHEDSTGPIVHAKCLSESSTIDLRMFNGIKMEEDI* | 1027 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte18g01557 | 1026 | Pfam | CID domain | 86 | 193 | IPR006569 | - | |
Pte18g01557 | 1026 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 79 | 1011 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Pte18g01557 | 1026 | SMART | 558neu5 | 79 | 201 | IPR006569 | - | |
Pte18g01557 | 1026 | MobiDBLite | consensus disorder prediction | 497 | 645 | - | - | |
Pte18g01557 | 1026 | MobiDBLite | consensus disorder prediction | 523 | 645 | - | - | |
Pte18g01557 | 1026 | MobiDBLite | consensus disorder prediction | 243 | 273 | - | - | |
Pte18g01557 | 1026 | SUPERFAMILY | ENTH/VHS domain | 76 | 198 | IPR008942 | - | |
Pte18g01557 | 1026 | ProSiteProfiles | CID domain profile. | 76 | 204 | IPR006569 | - | |
Pte18g01557 | 1026 | MobiDBLite | consensus disorder prediction | 243 | 261 | - | - | |
Pte18g01557 | 1026 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 875 | 902 | IPR013087 | - | |
Pte18g01557 | 1026 | CDD | CID_Pcf11 | 83 | 200 | IPR047415 | - | |
Pte18g01557 | 1026 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 877 | 897 | IPR013087 | - | |
Pte18g01557 | 1026 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Pte18g01557 | 1026 | MobiDBLite | consensus disorder prediction | 684 | 713 | - | - | |
Pte18g01557 | 1026 | FunFam | polyadenylation and cleavage factor homolog 4 | 73 | 201 | - | - | |
Pte18g01557 | 1026 | Gene3D | - | 72 | 201 | IPR008942 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte18g01557 | Pte-Chr18 | 27136762 | 27143342 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte18g01557 | 67 | 385 | C2H2 Transcription Factor Family | AT4G04885 | 37.391 | 4.95e-52 | 195 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pte18g01557 | CID | 2.4e-12 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte18g01557 | K14400 | - | qsa:O6P43_009520 | 813.142 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte18g01557 | 18 | 27136762 | 27143342 | Pte18g01557 | 18 | 27136762 | 27143342 | RCT |