Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01547 ATGAGTTCATTGACGAAATCTTGTGAAATTGTTGAAGAAAGTGAAGAGTCAACTATTGGTCATCAGAAGCCATTTGCAGAATATCAATTAAATTCAGGGTTGAGGACAGGCGAGCACAATGGAAAGCTTCCAGTGCTAAAAGTAGGGTACAAGGAATCTTTAGAAGATGATATTAATAAACTTTTTGAGGCAATCAGTCTTAAAAGACCATCAAAAGGTTCAGATAAATCAGAAATTGGTATGAGCCCTAAGATGAAAAATGTGATGAAGAAGGCAATCGCAGTAGGTGTGCCTGGGTCACCACGAATTGGAAATTCTGAGCCAGTCAATATGAAGCAGGCTCTAAGAGACCTATGCATCTCCAAGGCATCAGAAATGGCTGCAATGAAACGATTATTGAAATCGTCATACGCTCCAGCAACCTCTGAAGCTGGGAGAATAAAAACATTATACAATGCAGTTGTAGGTGAAGCTAGTGGATCTGGCACTTCATTGATCGAGGATAAAGACAGTATAGTTGGGATATCCCTAGTACCAGAAGAAACTAAATCCCCTTATTCTACAAGTTTGTCATCTCTTAAACAGCCAAAGATGACATCAAGCCAAAATACTAATTATTCTCCCGAAGTGTCTTGTTCAATAATAGAAAGTGAATCTGGGTCTTCATCATTGCAAAAAGAAACATCAAAGATTGATTTAGTACATGTGGAGAAAAATCCATCTGTACCAGCTCTATCTCATTCCAATTCTTATGCTACCTTGTTAGAGCTGGCTGAGAATATTCTGATCTCATCCAAGCCAACTAGTAAAACATCAACACAAAAGGCTGCAAGGAGGGGTGGGATGGAAACCACATCCTCAACTTCATCATCTACATCACTCATTGGAAAAAGAGTGAGCAAGCCTCGGAATGCACCCCGTGCGGTCGAACAAGTGCTAAGGAATAATACCTTGAATAAGAAAAAGACAAAACCAGATTCAGGTTCAACTGTTTCTAGTGCGAATAACATAACTGGCTGTAACTCAGAGCCTGGTACAAGTCAACTCGTTTGCGAAAGATGCCGCTGTGCCCTTAAAAATATGAAGACAGAAGAAAATCACGACTCTGTGACATCAAAGCACAAAAGTTCTAAAAATGGTGTGAGCTTGAGCAATGTGCAATCTGCGGCTTCTAAACTTGTTGTCACGTCAACTACCTGTAATAGAAGCAGAGCTGTTGGAAAAGTAAACAATATCACAAAATTGACTGAGATTGGTGAGATTTCTCAAAGTTCAAAAAGTAGCCAAGGTGATCATAGTAGTAGCACAAGTACCAGTGATGATAGCAATGCTAGTGGCTCCAGCTGTGGGAATAGACCTCATATGTCAAAAGATAGTAGGTGGGAAGCAATTCGTCAGGTTCAGACACAGTATGGGGTCTTAGGCCTGAAGCATTTTAATCTTCTAAAGAAGCTAGGCTCTGGAGATATTGGGACTGTTTATCTGGCTGAGCTAATTGGAACAAATTGCCTGTTCGCTATTAAAGTAATGGACAATGAATTTCTGGTGAGAAGGAAAAAGATGCCCAGGGCTCAAACTGAAAGAGAGATACTAAGAATACTGGACCATCCATTTCTTCCAACATTGTATGCTCAATTCACGTCTGATAATCTGTCTTGTCTAGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTTCGGCAGCGGCAGCTGGGAAGGAGTTTTTCTGAGGCTGCAGCAAGATTTTATGTTGCGGAGATCCTCCTTGCTTTGGAATATTTGCACATGCTTGGAGTTGTTTACCGGGATCTAAAACCTGAGAACATTCTTGTTCGCGAAGATGGTCATATTATGCTCACGGATTTTGATTTGTCACTCAGGTGCAGTGTAAGTCCGTCACTTCTCAATTTATCTGAGGATACAGATCCTGCAAGGATTACACGTCCTTCTTCAAAGACATCTTGCATTGGGCCATTCTGCATTGAGCCTTCCTGTCAAGTTCCATGCTTTAGCCCAAGGTTTTTACCTCCTGCAAAAACAAAAAAATCAAAACCTGATATTGGCACACAACTGAGAGCGTTGCCACAGCTCGTGGCTGAGCCTACTGATGCAAGATCAAATTCGTTTGTTGGTACTCATGAATACCTGGCCCCTGAGATCATAAAAGGAGAGGGTCATGGGGCCGCAGTCGATTGGTGGACATTTGGTATCTTTCTTTATGAGCTTCTTTATGGCAGAACACCCTTCAAAGGATCTAACAATGAAGAAACCTTAGCGAATGTAGTGTTGCAGAGTCTCAAATTCCCGGACACCCAATTTGCCAGTGACCAGGCGAGAGATCTCATCCGAGGATTGTTGGTTAAGGAGCCTGAAAACCGTTTGGGTACAGAAAAAGGAGCTGCAGAGTTGAAGCAGCATCCCTTCTTTGAGGGCCTCAACTGGGCACTCATACGGTGTGCTGTTCCTCCAGAAATTCCGGAGTTCTTGGATTCCCAAGGAAATGACAACTATCTTGAGTGTTACGGCGATGGAGAGCATTTGCAACTTGAGTTGTTTTAG 2562 0.4204 MSSLTKSCEIVEESEESTIGHQKPFAEYQLNSGLRTGEHNGKLPVLKVGYKESLEDDINKLFEAISLKRPSKGSDKSEIGMSPKMKNVMKKAIAVGVPGSPRIGNSEPVNMKQALRDLCISKASEMAAMKRLLKSSYAPATSEAGRIKTLYNAVVGEASGSGTSLIEDKDSIVGISLVPEETKSPYSTSLSSLKQPKMTSSQNTNYSPEVSCSIIESESGSSSLQKETSKIDLVHVEKNPSVPALSHSNSYATLLELAENILISSKPTSKTSTQKAARRGGMETTSSTSSSTSLIGKRVSKPRNAPRAVEQVLRNNTLNKKKTKPDSGSTVSSANNITGCNSEPGTSQLVCERCRCALKNMKTEENHDSVTSKHKSSKNGVSLSNVQSAASKLVVTSTTCNRSRAVGKVNNITKLTEIGEISQSSKSSQGDHSSSTSTSDDSNASGSSCGNRPHMSKDSRWEAIRQVQTQYGVLGLKHFNLLKKLGSGDIGTVYLAELIGTNCLFAIKVMDNEFLVRRKKMPRAQTEREILRILDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQRQLGRSFSEAAARFYVAEILLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVSPSLLNLSEDTDPARITRPSSKTSCIGPFCIEPSCQVPCFSPRFLPPAKTKKSKPDIGTQLRALPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGIFLYELLYGRTPFKGSNNEETLANVVLQSLKFPDTQFASDQARDLIRGLLVKEPENRLGTEKGAAELKQHPFFEGLNWALIRCAVPPEIPEFLDSQGNDNYLECYGDGEHLQLELF* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01547 853 SMART serkin_6 479 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01547 853 MobiDBLite consensus disorder prediction 364 385 - -
Pte18g01547 853 ProSiteProfiles Protein kinase domain profile. 479 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01547 853 CDD STKc_phototropin_like 477 831 - -
Pte18g01547 853 SUPERFAMILY Protein kinase-like (PK-like) 454 826 IPR011009 -
Pte18g01547 853 FunFam Serine/threonine-protein kinase D6PK-like 477 562 - -
Pte18g01547 853 FunFam serine/threonine-protein kinase D6PK-like 705 828 - -
Pte18g01547 853 PANTHER FLIPPASE KINASE 1-RELATED 284 829 - -
Pte18g01547 853 MobiDBLite consensus disorder prediction 267 332 - -
Pte18g01547 853 Gene3D Transferase(Phosphotransferase) domain 1 703 828 - -
Pte18g01547 853 Pfam Protein kinase domain 480 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01547 853 Pfam Protein kinase domain 707 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01547 853 Gene3D Transferase(Phosphotransferase) domain 1 559 627 - -
Pte18g01547 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Pte18g01547 853 FunFam serine/threonine-protein kinase D6PK-like 563 630 - -
Pte18g01547 853 Gene3D Phosphorylase Kinase; domain 1 477 558 - -
Pte18g01547 853 MobiDBLite consensus disorder prediction 420 454 - -
Pte18g01547 853 MobiDBLite consensus disorder prediction 420 459 - -
Pte18g01547 853 MobiDBLite consensus disorder prediction 183 207 - -
Pte18g01547 853 MobiDBLite consensus disorder prediction 310 332 - -
Pte18g01547 853 MobiDBLite consensus disorder prediction 267 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01547 Pte-Chr18 27045071 27049408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01547 1 854 AGC Kinase Gene Family AT3G52890 49.328 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pte18g01547 Pkinase 5.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01547 - K08286 qsa:O6P43_005910 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01547 18 27045071 27049408 Pte15g01038 15 7669193 7674365 RCT
Pte18g01547 18 27045071 27049408 Pte18g01547 18 27045071 27049408 RCT
Pte15g00591 15 4356061 4359023 Pte18g01547 18 27045071 27049408 RCT