Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01515 ATGGCGATGATAAACAGAATCACATCTGCTGCTACTTTTAGAATTCCAGCAACACGCGCTTCCCTTCTTCCTCCATTTTTTTGCATTGGTTGCAGAGGAATTGCTTCCAAACTATTCGTTGGAGGACTATCTTTTTATACCACAGAGAAAGGATTGTCAGATGCGTTTTCAGAGTTTGGACAAGTTGTTGAAGCTAAAATTGTAATGGACAGGGTATCAGATAAATCCAAAGGCTTTGGCTTTGTCACTTTTGCATCACTGGATGAAGCTGAGAAGGCTATAGCAGAGATGAACGGGAAGGCGCTGAATGGGCGTGCTATATTTGTGGATTATGCAAAACCCAAAACCAAATTCGGTGGGGAAATGCCCATTGCTAGAGGACCGCCTGAACCTGAACACATTAAGAGTGGTTGA 414 0.43 MAMINRITSAATFRIPATRASLLPPFFCIGCRGIASKLFVGGLSFYTTEKGLSDAFSEFGQVVEAKIVMDRVSDKSKGFGFVTFASLDEAEKAIAEMNGKALNGRAIFVDYAKPKTKFGGEMPIARGPPEPEHIKSG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01515 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Pte18g01515 137 Gene3D - 33 118 IPR012677 -
Pte18g01515 137 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 117 - -
Pte18g01515 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pte18g01515 137 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pte18g01515 137 SUPERFAMILY RNA-binding domain, RBD 37 127 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01515 Pte-Chr18 26846031 26847591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01515 36 124 Eukaryotic Initiation Factors Gene Family AT4G34110 33.708 7.42e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01515 - - csav:115698694 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01515 18 26846031 26847591 Pte18g01515 18 26846031 26847591 RCT