Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01499 ATGGATCATGAAATTGATATTCCTCCATTTTTTCTGTGCCCAATATCCCTGGAGATCATGAAAGACCCGGTGACAGTTTCTACTGGTATCACATATGATCGTGAGAGCATTGAGAAATGGTTGTTCTCTGAGAACAATAAAACGTGCCCAGTCACCAAACAACATCTATCTGACTGTACCGATCTGACTCCAAACCACACTCTTAGGCGATTGATGCAATCGTGGTGTACAGCGAATGCATCTCATGGCATCGAAAGGATACCTACTCCGAGGTCTCCAATCTCAAAGATCCAGATATGCAGACTCATCAAAAATGCAACTAAATCACCACAGCTGCAAACTCACTGTCTCAGAAGTCTCAGAACCATTGCATCAGAGAGTGAAATAAATAAACGTAACATCGAAGCCGCGGGTGCAGTTGAGTTTTTAGCATCACTTTTGATCATCAATACAGCTTCCTCAACATTGCTGCAGGAAAATCCTTATTCAGACGACGGGGTTGACTTTCTTATCACTAGTGTAGGCGATGAAGCCTTAAATCTTCTCCACAACCTTCATGTTTCAGAAACTGGGCTCAGAAATCTGTTTGCTATGAAAAATGGTGAATTTGTGGAGTCCTTAACAAGAGTCTTGCAGCGTGGGTACTTTGAGTCTCGTGCTTATGCAGTTCTCATGTTGAAATCCATGTTTGAAGTGGCTGATCCTGCGCATCTAGCCAGTCTAAGACCTGAACTCTTTTTTGAACTTGTACTAGTGCTGAAAGATCAGATATCTCTGCAGGCCTCAAACGCAACCTTAAAAATACTAATCCGAACATGTCTTTGGGGAAGAAACAGAATCAAAGCGGTGGAAGCAGGTGCAGTCTCGGTTTTAGTCGAACTTCTGCTTGACTCTAATGAAAGAAAGCCTACTGAGATGATATTAGTGTTACTGGATATGCTGTGTGCGTGTGCTGAGGGACGGGCAGACCTGTTGTGCCATGGGGCAGGTCTAGCTGTTGTTTCTAAAAGGATTCTGAGGGTGTCAACGCTGGCCACAGAGAAGGCTGTGAGGATTTTGTTTTCAATTTCGAAGTTCTCAGCAACAGCTAGTCTTCTTCAGGAAATGCTTCATTTGGGTGTTGTGGCAAAACTTGGATTGGTGCTTGAAGTGGACAGTGGCAAAAAGGTCAAGGACAAAGCCATTGAGATACTTAAAATGCATGCTCGGGCGTGGAGAGATTCTTCATGCATACCAAGAAGTTTGATTGCTTCATACCCATCTTGA 1266 0.4352 MDHEIDIPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSENNKTCPVTKQHLSDCTDLTPNHTLRRLMQSWCTANASHGIERIPTPRSPISKIQICRLIKNATKSPQLQTHCLRSLRTIASESEINKRNIEAAGAVEFLASLLIINTASSTLLQENPYSDDGVDFLITSVGDEALNLLHNLHVSETGLRNLFAMKNGEFVESLTRVLQRGYFESRAYAVLMLKSMFEVADPAHLASLRPELFFELVLVLKDQISLQASNATLKILIRTCLWGRNRIKAVEAGAVSVLVELLLDSNERKPTEMILVLLDMLCACAEGRADLLCHGAGLAVVSKRILRVSTLATEKAVRILFSISKFSATASLLQEMLHLGVVAKLGLVLEVDSGKKVKDKAIEILKMHARAWRDSSCIPRSLIASYPS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01499 421 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pte18g01499 421 CDD RING-Ubox_PUB 8 58 IPR045210 -
Pte18g01499 421 SUPERFAMILY ARM repeat 102 406 IPR016024 -
Pte18g01499 421 PANTHER WDSAM1 PROTEIN 3 412 IPR045185 GO:0061630
Pte18g01499 421 Gene3D - 84 404 IPR011989 -
Pte18g01499 421 SUPERFAMILY RING/U-box 4 84 - -
Pte18g01499 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pte18g01499 421 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pte18g01499 421 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Pte18g01499 421 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01499 Pte-Chr18 26692873 26694610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01499 1 422 U-box Gene Family AT2G35930 56.103 9.80e-167 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01499 - - gmx:100811258 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01499 18 26692873 26694610 Pte18g01499 18 26692873 26694610 RCT