Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01495 ATGAACGACTTGTTTAATTCAGTTACATTTACTCGCTCCCGCAACGACCAGGTTTCGCCGGACACACACCGCCATGTTATCCAAATGACGGCCGCCATCGCTGCAGATGGTTCTGTTCATCTTCACAAGTTCTTCGAGGAGGTAGAGCCTGTTAAACAAGAGCTTAAGGAGCTTGAAGGGCTTCATCAGCGCCTTTCTAACTCTCATGAGAAGAGCAAGACTCTTCACAATGCTAAGACCGTAAAGGACATCAGGTCTCGCATGGACAACGATGTGAACATGGCTTTAAAGAAAGCTAAGCAGATCAAGGTCAGGTTGGAAGCTCTCGATCGTTCCAATGCTACGAGCAGGAACTTGCCCGGTTGTGGACCCGGGTCGTCGTCGGACCGGACGAGGACTTCGATTGTGAACGGGCTGAGGAATAAGCTGAAGGACTCCATGGATGGGTTCAATAGCCTAAGGGAAAAAGTATCTTCTGAGTACAGACAGACCGTTCAACGTAGGTATTACACAGTAACCGGCGAGAACCCTGATGAGAAGACCGTTGACGTTTTGATCTCCACCGGTGAAAGTGAAACTTTCTTGCAGAAGGCCATAAAGCAACAAGGAAGAGCTAGCATTTTGGACACAATAAATGAGATTCGAGAGCGACATGATGCAGTCAAAGATATAGAGAAAAACTTAATGGAGTTGCACCAAGTGTTCCTGGACATGGCGGTGTTAGTTCAAGCTCAAGGTGAACAGTTAAATAACATTGAGAGCAATCTGGAACGAGCTGACTCATTTGTAAATCGTGGAGTCCAGCAATTGCAGACGGCAAAGCGACACCAGAAGAACACTCGGAAATGGACATGCTATGGCATTATAGTTCTGCTCATTATCATCTTGGTGATTGTTCTTCCCATCGTCCTAAGAAAATAG 921 0.4647 MNDLFNSVTFTRSRNDQVSPDTHRHVIQMTAAIAADGSVHLHKFFEEVEPVKQELKELEGLHQRLSNSHEKSKTLHNAKTVKDIRSRMDNDVNMALKKAKQIKVRLEALDRSNATSRNLPGCGPGSSSDRTRTSIVNGLRNKLKDSMDGFNSLREKVSSEYRQTVQRRYYTVTGENPDEKTVDVLISTGESETFLQKAIKQQGRASILDTINEIRERHDAVKDIEKNLMELHQVFLDMAVLVQAQGEQLNNIESNLERADSFVNRGVQQLQTAKRHQKNTRKWTCYGIIVLLIIILVIVLPIVLRK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01495 306 SMART tSNARE_6 206 273 IPR000727 -
Pte18g01495 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Pte18g01495 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Pte18g01495 306 CDD SNARE_syntaxin1-like 210 272 - -
Pte18g01495 306 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Pte18g01495 306 Pfam SNARE domain 247 299 IPR000727 -
Pte18g01495 306 PANTHER SYNTAXIN 67 295 IPR045242 -
Pte18g01495 306 Gene3D - 39 171 - -
Pte18g01495 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Pte18g01495 306 Gene3D - 200 304 - -
Pte18g01495 306 CDD SynN 43 198 IPR006011 GO:0016020
Pte18g01495 306 FunFam Syntaxin 132 204 304 - -
Pte18g01495 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte18g01495 306 SMART SynN_4 36 162 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01495 Pte-Chr18 26547239 26548991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01495 29 285 SNARE and Associated Proteins AT3G11820 72.374 6.55e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01495 K08486 - qsa:O6P43_006031 424.861