Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01494 ATGGCTGCCACAGCTACAGCCTTCTCTTCAATCTGCAACAGAATTTATAACATCTCCTTCACTCACTACTCCATTTCTATCCCTGCCAAATTCCCACAAAGACCTTCTCCAAAACCCCTCAACCTATGCCTTGAATCCCAACCATGCACTTGCTCTGATATTGTCTCTCTCTCACATGTCCGTTTAGCATGTGCCTCTTTTGATGGCGTTGAAGTAGCAGAAGAAGTTGAACCACGTCAAACACAACCAGAACAAGATAAGGAAGAGCAGCAAGTACCGTCGGATTCAGATGAGGAGAAGAGGCTTTACGTGGGAAACTTGCCGTTTTCTATGACTTCGTCCGAATTGACTAAGCTTTTTGAGGAGGCTGGCTCTGTGAAATCTGCGGAGATAGTATATGATCGTGTTACTGATAGAAGCAGAGGTTTTGGCTTTGTTACGATGGGGAGTGCTGAGGATGCAAAAAATGCAATCCGAATGTTTGATGGCTCGCAAGTGGGAGGTCGGACTGCTAAGGTTAATTTTCCAGAAGTACCTAGAGGAAAAGAAAGTTTGGTGATGGGGCCAAGAGCACGAAATAACAACAGCAACAGCAGTGGCTTTATAGACAGTCCGTACAAGATCTATGCTGGAAACCTTGGTTGGCGTGTGACCTCCCAAGATCTCAGAGATGCTTTTGCTGATCTGCCAGGGGTGTTGAGTGCCAAAGTAGTGTATGAGAAGGACTCAAGGAGGTCTAGAGGTTTTGGATTTGTCTCTTTTGAAAATGCAGAAGCTGTAGAGGCAGCTTTACAGGTCAAGAATGGAATGGAGCTGGAAGGACGGCCTTTAAGATTGAATGTGGCTGTAAATAAGAATACTACTCAATCGGAACCACCATCTGGAGAAGACAGTCCTGCAAGCAATGAGTTCCTTTCCAGCTACAGCACTTGA 933 0.4544 MAATATAFSSICNRIYNISFTHYSISIPAKFPQRPSPKPLNLCLESQPCTCSDIVSLSHVRLACASFDGVEVAEEVEPRQTQPEQDKEEQQVPSDSDEEKRLYVGNLPFSMTSSELTKLFEEAGSVKSAEIVYDRVTDRSRGFGFVTMGSAEDAKNAIRMFDGSQVGGRTAKVNFPEVPRGKESLVMGPRARNNNSNSSGFIDSPYKIYAGNLGWRVTSQDLRDAFADLPGVLSAKVVYEKDSRRSRGFGFVSFENAEAVEAALQVKNGMELEGRPLRLNVAVNKNTTQSEPPSGEDSPASNEFLSSYST* 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01494 310 Gene3D - 66 182 IPR012677 -
Pte18g01494 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pte18g01494 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 278 IPR000504 GO:0003723
Pte18g01494 310 PANTHER OS02G0815200 PROTEIN 69 287 - -
Pte18g01494 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Pte18g01494 310 MobiDBLite consensus disorder prediction 75 99 - -
Pte18g01494 310 SMART rrm1_1 101 174 IPR000504 GO:0003723
Pte18g01494 310 SMART rrm1_1 207 280 IPR000504 GO:0003723
Pte18g01494 310 SUPERFAMILY RNA-binding domain, RBD 90 197 IPR035979 GO:0003676
Pte18g01494 310 MobiDBLite consensus disorder prediction 284 310 - -
Pte18g01494 310 CDD RRM2_NsCP33_like 207 282 - -
Pte18g01494 310 CDD RRM1_PSRP2_like 101 180 - -
Pte18g01494 310 Gene3D - 183 297 IPR012677 -
Pte18g01494 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Pte18g01494 310 SUPERFAMILY RNA-binding domain, RBD 193 295 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte18g01494 Pte-Chr18 26545387 26546853 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01494 102 286 Eukaryotic Initiation Factors Gene Family AT3G16380 32.432 1.32e-14 72.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01494 - - qsa:O6P43_009680 369.392