Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte18g01494 | ATGGCTGCCACAGCTACAGCCTTCTCTTCAATCTGCAACAGAATTTATAACATCTCCTTCACTCACTACTCCATTTCTATCCCTGCCAAATTCCCACAAAGACCTTCTCCAAAACCCCTCAACCTATGCCTTGAATCCCAACCATGCACTTGCTCTGATATTGTCTCTCTCTCACATGTCCGTTTAGCATGTGCCTCTTTTGATGGCGTTGAAGTAGCAGAAGAAGTTGAACCACGTCAAACACAACCAGAACAAGATAAGGAAGAGCAGCAAGTACCGTCGGATTCAGATGAGGAGAAGAGGCTTTACGTGGGAAACTTGCCGTTTTCTATGACTTCGTCCGAATTGACTAAGCTTTTTGAGGAGGCTGGCTCTGTGAAATCTGCGGAGATAGTATATGATCGTGTTACTGATAGAAGCAGAGGTTTTGGCTTTGTTACGATGGGGAGTGCTGAGGATGCAAAAAATGCAATCCGAATGTTTGATGGCTCGCAAGTGGGAGGTCGGACTGCTAAGGTTAATTTTCCAGAAGTACCTAGAGGAAAAGAAAGTTTGGTGATGGGGCCAAGAGCACGAAATAACAACAGCAACAGCAGTGGCTTTATAGACAGTCCGTACAAGATCTATGCTGGAAACCTTGGTTGGCGTGTGACCTCCCAAGATCTCAGAGATGCTTTTGCTGATCTGCCAGGGGTGTTGAGTGCCAAAGTAGTGTATGAGAAGGACTCAAGGAGGTCTAGAGGTTTTGGATTTGTCTCTTTTGAAAATGCAGAAGCTGTAGAGGCAGCTTTACAGGTCAAGAATGGAATGGAGCTGGAAGGACGGCCTTTAAGATTGAATGTGGCTGTAAATAAGAATACTACTCAATCGGAACCACCATCTGGAGAAGACAGTCCTGCAAGCAATGAGTTCCTTTCCAGCTACAGCACTTGA | 933 | 0.4544 | MAATATAFSSICNRIYNISFTHYSISIPAKFPQRPSPKPLNLCLESQPCTCSDIVSLSHVRLACASFDGVEVAEEVEPRQTQPEQDKEEQQVPSDSDEEKRLYVGNLPFSMTSSELTKLFEEAGSVKSAEIVYDRVTDRSRGFGFVTMGSAEDAKNAIRMFDGSQVGGRTAKVNFPEVPRGKESLVMGPRARNNNSNSSGFIDSPYKIYAGNLGWRVTSQDLRDAFADLPGVLSAKVVYEKDSRRSRGFGFVSFENAEAVEAALQVKNGMELEGRPLRLNVAVNKNTTQSEPPSGEDSPASNEFLSSYST* | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte18g01494 | 310 | Gene3D | - | 66 | 182 | IPR012677 | - | |
Pte18g01494 | 310 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 102 | 170 | IPR000504 | GO:0003723 | |
Pte18g01494 | 310 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 208 | 278 | IPR000504 | GO:0003723 | |
Pte18g01494 | 310 | PANTHER | OS02G0815200 PROTEIN | 69 | 287 | - | - | |
Pte18g01494 | 310 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 206 | 284 | IPR000504 | GO:0003723 | |
Pte18g01494 | 310 | MobiDBLite | consensus disorder prediction | 75 | 99 | - | - | |
Pte18g01494 | 310 | SMART | rrm1_1 | 101 | 174 | IPR000504 | GO:0003723 | |
Pte18g01494 | 310 | SMART | rrm1_1 | 207 | 280 | IPR000504 | GO:0003723 | |
Pte18g01494 | 310 | SUPERFAMILY | RNA-binding domain, RBD | 90 | 197 | IPR035979 | GO:0003676 | |
Pte18g01494 | 310 | MobiDBLite | consensus disorder prediction | 284 | 310 | - | - | |
Pte18g01494 | 310 | CDD | RRM2_NsCP33_like | 207 | 282 | - | - | |
Pte18g01494 | 310 | CDD | RRM1_PSRP2_like | 101 | 180 | - | - | |
Pte18g01494 | 310 | Gene3D | - | 183 | 297 | IPR012677 | - | |
Pte18g01494 | 310 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 100 | 178 | IPR000504 | GO:0003723 | |
Pte18g01494 | 310 | SUPERFAMILY | RNA-binding domain, RBD | 193 | 295 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte18g01494 | Pte-Chr18 | 26545387 | 26546853 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte18g01494 | 102 | 286 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 32.432 | 1.32e-14 | 72.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte18g01494 | - | - | qsa:O6P43_009680 | 369.392 |