Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01493 ATGGCCATGAACCCTGTTTTTTTCAAAGAGCATCAAAAGATTGCCCATAACTCCACTGGACAGATGTCATCGGTAACTTCAGTCCCTTGGTGGATTTCCTTTGGATCCCAATTGGGTTATGGGGATTCATGCAATCAAACGAAGCCTTTTTCTCTGGAGCTCGCCAACTGTGGGGACCAATTTACCTCCACTAAGCCAGCAGGGAAAGGTGGTGAACAAGGAACTGATAAAGGAAATACCACTAACTTCACTATCTTTCCTGGTGATGCACAAAAACCAAACTCAATCATCTCTCTGCAATCATCTGTTCCCGATCACCGTACTCGGTTTGAGCTAGGATTTGGTCAGCCTATGGTCTACGGAAAATATCCTCATGTGGACCAATATTATGGAATTTTCTCAGCTTATGGACCTCAGTTCTCGGGCCGCGTTATGCTACCACTTGACTTGACAACTGATGATGGACCAATATATGTAAATGCTAAGCAGTATCATGGAATCATCAGACGCCGGCAATCTCGCGCAAAAGCGGAGCTTGAGAATAAAGTGACTAAAGCTCGGAAGCCATATATGCATGAATCGCGGCACCGTCATGCAATGCGTCGACCTAGGGGAAGTGGTGGTCGATTCCTGAAAACCAAGAGCTTGGATGGTGGGAAAAGCACCCATGAAGCAAATGGAATTGGTGTAGTAAAACTGACATATCCTGCTGGTTCGCTTAGTTCTGAATTGCAGCAATCGGATGGTGGGACTCTAAATTCATCCAAGGATACCAATGGAAGCAATTCAAACATTTCAGGATCAGAGGTGACAAGCATGTATTCAAGGGGAGAACTAGACTGTTTCCAAGTCAGTCATCATGGCTTGTCTATCCACTCTCTAGCTGATGTGATGGATAGCAGGCACGGCATTGTCATGCCCTCAAAGTGGGTTGCACCCGTAGATAACTGCTGCCACCTCAAAGTCTGA 969 0.4582 MAMNPVFFKEHQKIAHNSTGQMSSVTSVPWWISFGSQLGYGDSCNQTKPFSLELANCGDQFTSTKPAGKGGEQGTDKGNTTNFTIFPGDAQKPNSIISLQSSVPDHRTRFELGFGQPMVYGKYPHVDQYYGIFSAYGPQFSGRVMLPLDLTTDDGPIYVNAKQYHGIIRRRQSRAKAELENKVTKARKPYMHESRHRHAMRRPRGSGGRFLKTKSLDGGKSTHEANGIGVVKLTYPAGSLSSELQQSDGGTLNSSKDTNGSNSNISGSEVTSMYSRGELDCFQVSHHGLSIHSLADVMDSRHGIVMPSKWVAPVDNCCHLKV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01493 322 SMART cbf3 152 213 IPR001289 GO:0003700|GO:0006355
Pte18g01493 322 MobiDBLite consensus disorder prediction 191 208 - -
Pte18g01493 322 ProSiteProfiles NF-YA/HAP2 family profile. 153 213 IPR001289 GO:0003700|GO:0006355
Pte18g01493 322 Gene3D - 153 215 - -
Pte18g01493 322 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 156 210 IPR001289 GO:0003700|GO:0006355
Pte18g01493 322 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 42 275 IPR001289 GO:0003700|GO:0006355
Pte18g01493 322 MobiDBLite consensus disorder prediction 191 223 - -
Pte18g01493 322 MobiDBLite consensus disorder prediction 242 269 - -
Pte18g01493 322 ProSitePatterns NF-YA/HAP2 subunit signature. 158 178 IPR018362 GO:0003677|GO:0016602
Pte18g01493 322 PRINTS CCAAT-binding transcription factor subunit B signature 187 210 IPR001289 GO:0003700|GO:0006355
Pte18g01493 322 PRINTS CCAAT-binding transcription factor subunit B signature 156 178 IPR001289 GO:0003700|GO:0006355
Pte18g01493 322 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01493 Pte-Chr18 26539567 26544459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01493 30 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.237 2.35e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte18g01493 CBFB_NFYA 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01493 K08064 - qsa:O6P43_009681 457.603