LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g01472	ATGTCTCGTTTCTGGACACAGGGCGATTCTGACACTGAGTCAGATGCTACTGAAATTTCTGATGAAAATGACGATGTTGTGGTGGCCCAAGGAGCAAGCAGTCGATATTTGACTGGGAATGCTAGTGACAGTGATGACTCTGATGGCCAAAAGCGTGTTGTCAGGTCAGCCAAGGATAAGAGATTTGAGGAGTTATCTGCCACTGTTGATCAGATGAAGAATGCTATGAAGATTAATGATTGGGTGAGCCTGCAAGAGAGCTTTGACAAGATTAACAAGCAATTAGAGAAGGTTCTGCGGTTCACCGAGTCTGAGAAGGTTCCAAATATGTACATTAAGGCGTTAGTTATGTTAGAAGACTTCTTGGCACTGGCTCTGGCAAATAAAGATGCTAAAAAGAAGATGAGCAGTAGTAATGCCAAAGCGTTAAACTCTATGAAGCAAAAGCTCAAGAAGAATAACAAGCAATATGAGGATTTGATTAATAAGTACAGGGAGAATCCTGAGAGTGAGGAGGTGAATGATGAAGATGAAACAGAAGATGACGACGACGATGTAGAGTCTGTTGAAGAGTATCCTGATAAGATTTCCATGAAATCAGGCTCTGAGGATGAACAAGAAGAAAAGGAAGATGATGTGGATGGTCCCTGGATCCAAATGCCAAACATTAAAGATAAACTCAGGCAATTTATGAAAAACCCAAGTGAGATCACATGGGATAGTGTTAATAAGAAATTCAAGGAAATTGTGGCTGCTAGGGGTAAGAAGGGGACTGGACGGTTTGAGCAGGTTGAACAGCTTTCCTTTTTAGCAAAGGTGGCCAAAACACCTGCTCAGAAGCTTGAAATTCTCTTTAGTGTTGTTTCTGCTCAATTTGATGTCAATCCCGGACTGAATGGACATATGCCTATAAATGTTTGGAAGAAATGTGTGCAGAACATGTTGGTAATTCTGGATATACTTGTGCAACATCCTAATATTATGGTGGATGACTCGATTGAGCCTGATGAAATTGAAACTCAGAAGGGAGCAGATTATGACGGAACAATTCGAGTTTGGGGAAATTTGGTAGCCTTCCTAGAAAAGATGGATACTGAATTCTTCAAGAGCCTGCAATGCATCGACCCACATACCCGCGATTATGTTGAGAGATTGAGGGATGAACCCCTCTTTTTGGTTCTTGCCCAAAATGTTCAGGATTATCTTGAACGAGCTGGAGATTTTAAAGCAGCTGCTAAGGTGGCTCTCAGGCGTGTTGAACTTATTTATTACAAACCACAAGAGGTTTATGCTGCCATGAGAAACCTAGCGGAGCAGGCACAGGATGGCGAAATTGGAGATGGAGGTGGTGAGACTAAGCTTCCAGATGAAAGCAAAGGTCCTCCTGCCTTTATAGTTACTTCTGAGTTGGTTCCTCGGAAGCCAACCTTTCCTGAAAACAGTCGGACCCTTATGGATATTTTGGTCTCCCTCATATATAAATATGGAGACGAGAGAACTAAAGCTCGTGCTATGCTTTGTGATATTTATCACCATGCTGTTTTGGACGAGTTTTCTACATCCCGTGATCTGCTTCTTATGAGTCATTTACAGGATAGTATCCAGCTGATGGACATTTCTACCCAGATTCTCTTCAACAGGGCTATGGCACAACTTGGACTCTGCGCATTCCGGGCTGGATTGATAACAGAAGCACATGGTTGCCTCTCTGAACTCTACTCTGGTGGAAGGGTAAAGGAACTGCTTGCGCAAGGCGTTTCACAGAGCAGATATCATGAGAAAACTCCAGAACAAGAAAGGTTGGAAAGGAGACGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCTTGGAGTCAGTTCATCTAATATGTGCGATGCTGCTAGAAGTTCCCAACATGGCAGGTAATATCCACGATGCAAAGCGCAAGGTAATAAGTAAGAACTTCCGTCGCTTGCTTGAGGTAAGTGAAAAACAAACATTCACTGGCCCCCCTGAAAATGTTAGAGACCATGTGATGGCTGCCACTAGAGCACTTGCCAAAGGAGATTTCCAAAAGGCACTTGAGGTCATCGGCGCACTTGATGTCTGGAAGTTTGTCAGAAATCGGGACGTTGTGTTTGAGATGCTGAAGGACAAAATCAAAGAGGAGGCGTTGAGGACTTACCTCTTGACGTTCTCGTCATCTTATGATTCTTTGAAGTTGGACCAGCTCAGCAAAATGTTTGACCTCTCTATTACACGTGCTCATAGTATTGTAAGTAAGATGATGGTCAATGAGGAGCTTTATGCTAGCTGGGACCAACCGACAGGGTGCATTGTTTTCCACGAAACCGGACACTCTAGGTTGCAAGCCTTGTCATTCCTGTTTACTGAGAAGTTATCCGTAATGGCTGAGAATAACGAAAGAGCTTTGGAGGGAAGGATTGGTGGTGGTGGATTAGAGTTGCCCCCGAGGCGGAGAGACAGCCAGGACTACAATGCTACTACTGGCACAGCGACATTAAGTGGCAGGTGGCAAGAGAACCTATCTTTCAATCAACAGAGGCAAAGTGGTGGCGGTGGACGAGCAGGTTATGGCAGTGGACGACAAATGTCTTTCAGCCAGGCATCTGGGGGTGGATATTCAAGGGACCATGCAGGTCAAGGACGTTTTGGGGGAAGCAATCAGAGCAGTAGAGGTTCTGGGTCAGGTAGGTCTCATAGTTCTGTATCACGGGGATCCCAAGAAATGTCAACCCGCATGGTTAATCTAAACAGAGGGGTCCGTGCTTGA	2778	0.4438	MSRFWTQGDSDTESDATEISDENDDVVVAQGASSRYLTGNASDSDDSDGQKRVVRSAKDKRFEELSATVDQMKNAMKINDWVSLQESFDKINKQLEKVLRFTESEKVPNMYIKALVMLEDFLALALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPESEEVNDEDETEDDDDDVESVEEYPDKISMKSGSEDEQEEKEDDVDGPWIQMPNIKDKLRQFMKNPSEITWDSVNKKFKEIVAARGKKGTGRFEQVEQLSFLAKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNIMVDDSIEPDEIETQKGADYDGTIRVWGNLVAFLEKMDTEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQDYLERAGDFKAAAKVALRRVELIYYKPQEVYAAMRNLAEQAQDGEIGDGGGETKLPDESKGPPAFIVTSELVPRKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHAVLDEFSTSRDLLLMSHLQDSIQLMDISTQILFNRAMAQLGLCAFRAGLITEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAGNIHDAKRKVISKNFRRLLEVSEKQTFTGPPENVRDHVMAATRALAKGDFQKALEVIGALDVWKFVRNRDVVFEMLKDKIKEEALRTYLLTFSSSYDSLKLDQLSKMFDLSITRAHSIVSKMMVNEELYASWDQPTGCIVFHETGHSRLQALSFLFTEKLSVMAENNERALEGRIGGGGLELPPRRRDSQDYNATTGTATLSGRWQENLSFNQQRQSGGGGRAGYGSGRQMSFSQASGGGYSRDHAGQGRFGGSNQSSRGSGSGRSHSSVSRGSQEMSTRMVNLNRGVRA*	926

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g01472	925	ProSiteProfiles	PCI domain profile.	609	781	IPR000717	-
	Pte18g01472	925	Coils	Coil	140	167	-	-
	Pte18g01472	925	MobiDBLite	consensus disorder prediction	884	917	-	-
	Pte18g01472	925	MobiDBLite	consensus disorder prediction	808	833	-	-
	Pte18g01472	925	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	710	798	IPR000717	-
	Pte18g01472	925	MobiDBLite	consensus disorder prediction	848	925	-	-
	Pte18g01472	925	PANTHER	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	1	919	IPR027516	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Pte18g01472	925	Pfam	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	42	641	IPR008905	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Pte18g01472	925	Pfam	PCI domain	649	778	IPR000717	-
	Pte18g01472	925	Hamap	Eukaryotic translation initiation factor 3 subunit C [EIF3C].	1	860	IPR027516	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Pte18g01472	925	MobiDBLite	consensus disorder prediction	163	218	-	-
	Pte18g01472	925	Gene3D	-	716	784	IPR036388	-
	Pte18g01472	925	MobiDBLite	consensus disorder prediction	171	190	-	-
	Pte18g01472	925	MobiDBLite	consensus disorder prediction	1	57	-	-
	Pte18g01472	925	SUPERFAMILY	"Winged helix" DNA-binding domain	705	780	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g01472	Pte-Chr18	26348088	26352514	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g01472	2	926	Eukaryotic Initiation Factors Gene Family	AT3G56150	66.844	0.0	1168

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g01472	K03252		-	cave:132191463	1301.58

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte18g01472	18	26348088	26352514	Pte18g01472	18	26348088	26352514	RCT