Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01464 ATGGCTGTGACCTGTGACAAGAATGTCTACGATAGCCTACCTCTGAAGCATGGAAGAACACAAAAGAAAATAGAAGCAAACTCACAGAAACAGTTTGGATTCCTTATTGAAAAATCTAAATGTCGATTGATGCGATTTAGCTTCAGCTTGGCTCTTTTCCTCTCCTCATTCCTGAAGAAAAATCGGGTTTCTCAATGTGCATTGCGTGTGTTCGAATATACCAGTAGAATGCCTGCAACGCAGTTATCTGCCAAGATACATGATGAGGTTAGAAAGTTTTCCTATCAAACTGGTGTGAAGGTTGTAGTTGCTTATGGAGGAGCGCCAATTTCCCAACAGTTGAAAGAGCTTAAAATAGGGGTTGATATTCTTTTAGCTACCCCTGGGCGATTGGTGGATTTGCTTGAGAGGGCTAGGGTCCGTTTGCAGATGATAAGATATTTGGCACTTGATGAGGCAAATCGGATGCTGGATATGGGATTTGAGCCTCAAATAAGAAAAATTGCGGAACAAATGGACATGTCTCCGCCAGGCATGAGACAAACGATGCTATTCAGTGCCACTTTTCCAAAAGAGATACAGTTTTGTCTCACTGCTTTGGTGACTTTTTTGTTTCTGGCTGTCGGAAGGGTTGGTTCCAGTACCGATCTTATTGTTCAAAGGGTTGAGTATGTTCTTGAGTCTGATAAAAGAAGCCACCTCATGGACCTTCTTCATGCTCAAAGGGAAAATGGAACTCACGGAAAGACTGGAAAGATACCCATTTTAGTGGCAACAGATGTTGCAGCTTGTGGTCTTGATATACCCCATGTTGCTCACGTGGTAAACTTCGATCTTCCCAATGATATTGACGATTATGTACATAGAATAGGTCGAACTGGCAGAGCTGGCAAAACAGGACTGGCAACAGCCTTCTTTAACGTGTACAATCAGTCATTGGTTCGGCCATTGTCAGATCTAATGCAGGAGGCAAATCAGGAAGTGCCTGCTTGGCTTACAAGTTTTGCAGCATAA 1014 0.429 MAVTCDKNVYDSLPLKHGRTQKKIEANSQKQFGFLIEKSKCRLMRFSFSLALFLSSFLKKNRVSQCALRVFEYTSRMPATQLSAKIHDEVRKFSYQTGVKVVVAYGGAPISQQLKELKIGVDILLATPGRLVDLLERARVRLQMIRYLALDEANRMLDMGFEPQIRKIAEQMDMSPPGMRQTMLFSATFPKEIQFCLTALVTFLFLAVGRVGSSTDLIVQRVEYVLESDKRSHLMDLLHAQRENGTHGKTGKIPILVATDVAACGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNVYNQSLVRPLSDLMQEANQEVPAWLTSFAA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01464 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 311 IPR027417 -
Pte18g01464 337 Pfam DEAD/DEAH box helicase 78 193 IPR011545 GO:0003676|GO:0005524
Pte18g01464 337 Gene3D - 246 337 IPR027417 -
Pte18g01464 337 SMART helicmild6 220 297 IPR001650 -
Pte18g01464 337 Pfam Helicase conserved C-terminal domain 248 297 IPR001650 -
Pte18g01464 337 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 160 336 IPR001650 -
Pte18g01464 337 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 207 IPR014001 -
Pte18g01464 337 Gene3D - 75 222 IPR027417 -
Pte18g01464 337 CDD SF2_C_DEAD 219 306 - -
Pte18g01464 337 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 238 - -
Pte18g01464 337 SMART ultradead3 33 221 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01464 Pte-Chr18 26317187 26322659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01464 51 330 Eukaryotic Initiation Factors Gene Family AT1G72730 28.221 2.76e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01464 K11594 - twl:119995038 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01464 18 26317187 26322659 Pte18g01464 18 26317187 26322659 RCT