Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01452 ATGACGATCTTGCTCACTACAACGACCCCATTCTCGTTTCTTCACAAGGCAACCAAGTTGCACAGGGACGATCTTGGCTTCTGCATTGCGTTAGGGGGTGGTGCGTGTCTCACAGGAAAAGCCTCTGAAAACGATATAGGTGTGGCTTGGAGGTGGCAGGTGAAAGAGTTTCATCTGACGAGCAGACGAGGGCGTTCGTGTCAAACAGCAGAGCACACGGAATACGCAGATGATGGTGCGGCACTTTCGTCACCTACCAGTGCAATGTCATCCCTTCAGATGGAGTTCTGTATGAAAAGCAACGGTTGGGGTGCTGGAAAAGGCAACAAAGATCCTGAAGTGGACGAAGCTGAAAGGGGTAGTTCAAGAGGATTAAGCGAAGATGATGAGAACGGCTCCACAAAAAAGAAACCCAGACTTTCCGAGGAACAGTCAGCTTATCTTGAAGAGTGCTTCAAAGAGCACACCACTTTAAACCCTCAAAAATTAGCACTAGCTAAGCAGTTGCATCTTCATCCTCGCCAAGTGGAAGTATGGTTTTCAAATAGAAGAGCGAGGACAAAGCTGAAGCAGAAGGAGGTAGATTGTGAATACTGGAAAAGATACTGTGAGACTCTGACGGAAGAGAATAGGAGGTTACAAAAGGAATTGCAAGAGCTCTGA 663 0.4721 MTILLTTTTPFSFLHKATKLHRDDLGFCIALGGGACLTGKASENDIGVAWRWQVKEFHLTSRRGRSCQTAEHTEYADDGAALSSPTSAMSSLQMEFCMKSNGWGAGKGNKDPEVDEAERGSSRGLSEDDENGSTKKKPRLSEEQSAYLEECFKEHTTLNPQKLALAKQLHLHPRQVEVWFSNRRARTKLKQKEVDCEYWKRYCETLTEENRRLQKELQEL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01452 220 ProSiteProfiles 'Homeobox' domain profile. 131 190 IPR001356 GO:0003677
Pte18g01452 220 MobiDBLite consensus disorder prediction 109 141 - -
Pte18g01452 220 Coils Coil 203 220 - -
Pte18g01452 220 SMART halz 190 220 IPR003106 GO:0006355|GO:0043565
Pte18g01452 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 62 220 - -
Pte18g01452 220 Pfam Homeodomain 135 188 IPR001356 GO:0003677
Pte18g01452 220 SUPERFAMILY Homeodomain-like 125 192 IPR009057 -
Pte18g01452 220 Gene3D - 133 196 - -
Pte18g01452 220 MobiDBLite consensus disorder prediction 104 141 - -
Pte18g01452 220 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Pte18g01452 220 CDD homeodomain 135 191 IPR001356 GO:0003677
Pte18g01452 220 SMART HOX_1 133 194 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01452 Pte-Chr18 26206387 26207532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01452 73 220 Homeobox Transcription Factor Family AT5G47370 56.494 8.47e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte18g01452 Homeodomain 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01452 K09338 - cave:132191607 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01452 18 26206387 26207532 Pte18g01452 18 26206387 26207532 RCT