Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01451 ATGGGAGACGAGACAGTTGATGCAATGAATCTGGACTTAAACCTCGGTCCAGCTCCGGAGCCAGCTGTAGGCTCAGCTCCAAATCAGCCTGTGATTTTTGATGATTGGATCGATGATCCTACTTATAGATGGAGTGAAACTATGAGGCATAGAGCTCCACAAAGGCGGAGATGGCGTCAGCTTCATACAATGCCTCAATCTCAAGGCATTGCAATGGAATTAAATCAGCTCTTGATCAACTCTGGCAATGGTAGTATGTTACAAGTGGGTGAAGGTAGTGTGGCAGCTGAGGGAAGAACTGAAGAGGTACCTAAAACTTGCGATAATACAGGTGTCACTGTAGAAAAGACTTCAGAGGACAAGGCGGATGTTGAAAAGTGTGATGTCAATGATGGGAGCTTTTTTGACTGTAATATTTGTCTGGACTTGGCTAAGGATCCTGTTGTGACTTGTTGCGGTCACTTGTTTTGCTGGTCTTGCCTTTACCGATGGTTACATGTGCATTCTGATGCTAAGGAGTGTCCAGTATGCAAGGGAGAGGTTACAACAAAAAACGTGACTCCTATATATGGTCGTGGGAATTATAGGATGGAATCTGAGGAGGATCCTAGTCTTAAAATCCCTCGTCGGCCCCAAGCAAGGCGTGTCGAGAGTTTGAGGCAAACCATTCAGAGGAATGCATCAGTGCCCCCTGTGGAGGAGATGATTCGTCGTCTTGGTAGCAGAATTGACCTTCGGGATGTTGTGCAGCCCAATGAACTGGATGTCCGTGAATCAGCCGAAAGAAGAACTTCACTGTTGAATAGGTTTTTGACATCTCGAGGACTTCGAAGAGAACAAAATCAGGGTGCCAGCCCTGACGAAGTGGTTGATTTAACTCAAAGTGGCCCTGGTGATAACCACAGGGTTCAGTCTGTACTTTTACAGAGAGCACGCGCACCAAGAACAAATCCTACGTCCCTGTCATCTGCATTAAATTCTGCTGAAAGGTTAGTCGATGCATACTTCCGTAGCCATCATATAGGTAGGAACCAAGAGCAGGCTCCTCCTACTGTCGATGATCGTGATTCCTATTCGAGCATTGGTGTTGTTATAAACTCTGAGAGTCAAATGGACACTGCTATGGAGATAGATTCCCTTGTATCTCTATCGACCTCCTCTTCAAGAAGAAGAGCTGACGCGTCCAGAGTATCTGATGTGGATACTGGAGATTCTCGTGCACCCAGAAGGAGAAGGTTAAATCGAGAATAG 1251 0.4604 MGDETVDAMNLDLNLGPAPEPAVGSAPNQPVIFDDWIDDPTYRWSETMRHRAPQRRRWRQLHTMPQSQGIAMELNQLLINSGNGSMLQVGEGSVAAEGRTEEVPKTCDNTGVTVEKTSEDKADVEKCDVNDGSFFDCNICLDLAKDPVVTCCGHLFCWSCLYRWLHVHSDAKECPVCKGEVTTKNVTPIYGRGNYRMESEEDPSLKIPRRPQARRVESLRQTIQRNASVPPVEEMIRRLGSRIDLRDVVQPNELDVRESAERRTSLLNRFLTSRGLRREQNQGASPDEVVDLTQSGPGDNHRVQSVLLQRARAPRTNPTSLSSALNSAERLVDAYFRSHHIGRNQEQAPPTVDDRDSYSSIGVVINSESQMDTAMEIDSLVSLSTSSSRRRADASRVSDVDTGDSRAPRRRRLNRE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01451 416 FunFam Zinc finger family protein 118 191 - -
Pte18g01451 416 SUPERFAMILY RING/U-box 133 190 - -
Pte18g01451 416 MobiDBLite consensus disorder prediction 277 300 - -
Pte18g01451 416 MobiDBLite consensus disorder prediction 392 416 - -
Pte18g01451 416 MobiDBLite consensus disorder prediction 382 416 - -
Pte18g01451 416 Pfam Zinc finger, C3HC4 type (RING finger) 137 177 - -
Pte18g01451 416 SMART ring_2 137 177 IPR001841 -
Pte18g01451 416 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Pte18g01451 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 228 IPR013083 -
Pte18g01451 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 107 318 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte18g01451 416 CDD RING-HC_AtRMA-like 135 178 - -
Pte18g01451 416 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01451 Pte-Chr18 26192957 26195542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01451 1 405 C3H Transcription Factor Family AT3G58030 52.064 2.88e-130 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01451 K10666 - qsa:O6P43_005826 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01451 18 26192957 26195542 Pte18g01451 18 26192957 26195542 RCT