Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01444 ATGGATGTTCGTAAGAGAGGGAGGCCCGAAATTGGCTTCAGTACGAATGGCAGTGCCAAGAAATCCAAGCAAGAATTCAACTCCTTATCAACTGGTGTTGGAAGCAAATCCAAGCCATGCACCAAGTTTTTCAGTACTGCTGGTTGTCCATTTGGCGAAAGCTGTCATTTCTTGCACTATGTCCCTGGTGGGTACAATGCTGTGTCTCAGATGATGAATCTCGCACCTGGCGGTCCTTTAGCTTCTAGGAATGTAGGAGTAGCTGCTGTATCTGTGCCAAATGGATCTCCCGGTCCTGTTAAAAGCCGCCTCTGCAATAAACATAATACTGCTGAGGGCTGCAAATTTGGTTCCAAATGCCATTTTGCTCATGGAGAATGGGAACTTGGTAGGCCTGTTGCCCACTCACTCGATGACACCCGTGCAGTCGGATCCATTCCTGGCCGTATGGTAGGTAGGATGGAGCCACCTGCTATAGGTGCTGCGGCAAGCTTTGGTTTCTCTTCCACAGCCAAAATTAGTGTTGCAGCTTCTCTTGCTGGAGCAATAATTGGCAAGGGCGGTGTGAATGCCAAGCTGATAAGTCGGCAAACAGGGGCTAAACTCTCTGTCCGGGAGCACGAGTCGGATCCTAATCTTAGGCAAATCGAATTGGAAGGCACTTTCGAGCAAATCAAGGAAGCTGAAAGCATGGTTAGGGAGCTGATTTCATCTGCAATGATGTCTGGCCATGTGAAAGCCTCTGGCCCTCCTGGTGCCCCTGCTCCTCGTGGGGACAATTTCAAGACAAAGCTTTGTGATAATTTCACTAAAGGATCATGTACCTTCGGAGAGAGATGTCACTTCGCACATGGAACTGCTGAATTGAGGAATTTCGGTGTTTAA 885 0.4847 MDVRKRGRPEIGFSTNGSAKKSKQEFNSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVSQMMNLAPGGPLASRNVGVAAVSVPNGSPGPVKSRLCNKHNTAEGCKFGSKCHFAHGEWELGRPVAHSLDDTRAVGSIPGRMVGRMEPPAIGAAASFGFSSTAKISVAASLAGAIIGKGGVNAKLISRQTGAKLSVREHESDPNLRQIELEGTFEQIKEAESMVRELISSAMMSGHVKASGPPGAPAPRGDNFKTKLCDNFTKGSCTFGERCHFAHGTAELRNFGV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01444 294 Gene3D K Homology domain, type 1 166 259 IPR036612 GO:0003723
Pte18g01444 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Pte18g01444 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pte18g01444 294 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Pte18g01444 294 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
Pte18g01444 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pte18g01444 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Pte18g01444 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Pte18g01444 294 SUPERFAMILY CCCH zinc finger 100 130 IPR036855 GO:0046872
Pte18g01444 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 241 IPR036612 GO:0003723
Pte18g01444 294 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Pte18g01444 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 148 IPR045877 GO:0003729
Pte18g01444 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Pte18g01444 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pte18g01444 294 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Pte18g01444 294 Pfam KH domain 171 234 IPR004088 GO:0003723
Pte18g01444 294 CDD KH-I_AtC3H36_like 171 236 - -
Pte18g01444 294 Gene3D - 97 131 - -
Pte18g01444 294 Gene3D - 260 291 - -
Pte18g01444 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Pte18g01444 294 FunFam Zinc finger CCCH domain-containing protein 256 291 - -
Pte18g01444 294 SMART kh_6 167 237 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01444 Pte-Chr18 26149523 26152889 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte18g01444 KH_1 5.9e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01444 - - qsa:O6P43_009479 442.965