Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01428 ATGGCTGACCCTTACTCCAATTTTTTCACAGGCCTTTTCACGTTCAACTCTCTCCACTATTGTCCACCTTCAAATCCAGGTGATCCTTCGCTTCTTCCTTATCATACTCACTACTCCTTCATCAACCAGCACACCAACTATAGTGCCTTTTTCCAGCATCACCAAGGTGGCATCTGCTCACCCCCATCTCCTCCACTGAGAGAAGCTCTCCCTCTTTTGCGGCTGAGCCCGACAAAGGCAGAAGAGCATCAAGATCAAGAACAAGAGAGCCATTTTTCCAGTTCTGCTGTGGATATCGATCGTAACATAAGCAGCAAAACGAAAGAAGAGGAAGAGGACGCCAGTGTGACTGTTGCACTTCACATAGGATTGCCAAGCCCTAGTGCTGCTGAAATAGCCTCTGTGCTATCTTCTTCGTCTGAGATAACAGACAAAGACCACGGCGATGTTGATGATTCTGGATTCACCGGCAGTACACTTAACAAGGGCCAGTATTGGATCCCCTCCCCTTCTCAGATTCTCATCGGTCCTACACAGTTCTCATGCCCTGTTTGCTGCAAAACCTTTAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGGTCACAGTACAGGAAAGGGCCAGAATCACTGAGAGGCACACAACCAACCGGAATGCTTAGGCTTCCTTGCTATTGCTGTTCGACAGGGTGTAAGAACAACATTGATCACCCGAGGGCAAAGCCACTGAAGGACTTCAGAACTCTTCAAACGCATTATAAAAGGAAGCACGGAATTAAACCTTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGGGATTGGAGAACCCATGAGAAAAACTGCGGGAAGCTTTGGTATTGCACATGTGGATCTGATTTCAAGCACAAAAGGTCTCTCAAGGATCATATAAAAGCTTTTGGGAATGGCCATGCAGCATATGGTGTGGATGGCTTTGAGGAAGATGACGAGCCTGCATCTGAGGTAGAGCAAGACAATGAGTCCACGAAGTGA 1026 0.4727 MADPYSNFFTGLFTFNSLHYCPPSNPGDPSLLPYHTHYSFINQHTNYSAFFQHHQGGICSPPSPPLREALPLLRLSPTKAEEHQDQEQESHFSSSAVDIDRNISSKTKEEEEDASVTVALHIGLPSPSAAEIASVLSSSSEITDKDHGDVDDSGFTGSTLNKGQYWIPSPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSTGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIKAFGNGHAAYGVDGFEEDDEPASEVEQDNESTK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01428 341 MobiDBLite consensus disorder prediction 79 100 - -
Pte18g01428 341 MobiDBLite consensus disorder prediction 321 341 - -
Pte18g01428 341 PANTHER ZINC FINGER PROTEIN WIP2 44 338 IPR043584 GO:0003700|GO:0010468
Pte18g01428 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Pte18g01428 341 SMART c2h2final6 264 284 IPR013087 -
Pte18g01428 341 SMART c2h2final6 180 202 IPR013087 -
Pte18g01428 341 SMART c2h2final6 227 259 IPR013087 -
Pte18g01428 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 284 IPR013087 -
Pte18g01428 341 SUPERFAMILY beta-beta-alpha zinc fingers 250 284 IPR036236 -
Pte18g01428 341 Gene3D Classic Zinc Finger 179 202 - -
Pte18g01428 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Pte18g01428 341 SUPERFAMILY beta-beta-alpha zinc fingers 176 202 IPR036236 -
Pte18g01428 341 Gene3D Classic Zinc Finger 222 312 - -
Pte18g01428 341 FunFam Zinc finger protein WIP2 233 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01428 Pte-Chr18 26017573 26020063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01428 1 341 C2H2 Transcription Factor Family AT3G57670 61.619 1.88e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g01428 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01428 - - jre:108986074 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01428 18 26017573 26020063 Pte18g01428 18 26017573 26020063 RCT
Pte18g01428 18 26017573 26020063 Pte15g01228 15 9421403 9423973 RCT