Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01423 ATGAATCACTTAACAATTCAGACTGAAGATTCTTTTGCAAGCTTGCATGAGCTGGCTGCCAATAACGATACTGAGGGTTTCAAAAGATTGATTGAATGTGACCCTTCCTCTGTTGATGAGATTGGACAATGGTATGGTCGAAGGAAAGGCTCGAAGCAGATGGTTACTGAGCATCGAACACCTTTGATGGTAGCTGCCACTTATGGTAGCATTGATGTCATGAAATTGATTCTTTCATTATCCGTTGATGATGTGAATCGAACCTGTGGCTTTGACAAGAGTACTGCCCTTCACTGTGCTGCCTCAGGGGGGGCTTCAAATGCAGTTGATGCAGTGAAACTTCTCTTAGCTGCCGGCGCTGATTCAAATATTAGGGATGCTAATGGGGACCGCCCCATTGATGTTATTGTTGTTCCTCCCAAGCTCCAGGATGTCAAAATTAGTCTTCTAGAACTTCTCAGTACTGATGGTTCTCCAATTGAGCGCAATCTGAGAGTGTCAACAGTTATGTCAAATTCAAACTTGCCTCCTTTATCTAATTCCCCAGAGAACGGGTCCCCATCTTATGCAGCAGACATCCAATTGAAGTTGAAGGCAAATGAGGCCCCTGCACCATCTGCTTCGGAGAAGAAGGAATATCCTGTTGACCCTTCTTTGCCAGACATTAAGAATAGCATATATTCAACTGATGAGTTCCGGATGTATTCCTTCAAGGTACGACCTTGTTCTCGTGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTCCATCCAGGGGAGAATGCTCGGAGAAGGGATCCTAGGAAATTTCACTATAGTTGTGTCCCTTGTCCGGAATTCCGGAAGGGGGCTTGTAGACGTGGGGATATGTGTGAGTATGCTCATGGGGTTTTTGAGTGTTGGCTGCATCCTGCACAATACCGAACTCGTCTTTGCAAGGATGGTACAAGTTGCTCTAGAAGGGTTTGCTTCTTTGCCCACACGAATGAAGAACTTCGACCTTTGTATGTTTCAACTGGTTCTGCTGTTCCTTCACCCCGTTTATGTAGTTCATCTGCCATGGACTTCGGTCAAGCCATGAATATGTTACCAAGCTCTCCATCCTCCCTGTCTGTAATGTCCCCTTCACCATTTACTCCACCTATGTCTCCACCTGGCAATGGAGTTGCACATTCTTCTGTTCCTTGGCCTCAACAAAATGTCCCATCATTGCATTTGCCAGGAAGCAATCTTCAGTGTAGTCGATTGAGATCATCTCTCAATGCTAGAGATATTCCTGCAGAGGAATTTGAGTTGTTGTCAGATTATGATGCTCAGCAACAGCAACTCCTGAACGAGTTATCTTGTCTGTCTCAACAATCTCTAAATTCTAATTCTTTGAACCGCCTTGGCCGGCTGAAGATCATGGCACCTTCAAATCTTGATGATCTGTTTTCGGCTGAGAGCTCATCTCCCAGGTTTGCTGATCAAGCAATGGGGGCGACTGTTTTCTCACCAACACATAAATCAGCTGTTCTCAATCAATTTCAGCAGCAGCAAAGTATGCTATCACCTGTGAACACAAATTTCTCAAGTAAGACCCCTGAACATCCACTATTGCAGGCGTCCTTTGGGGTGCAAGCATCAGGAATGATGTCCCCACGCAATGTGGAACCTATTTCACCAATGAGTGCTCGCATTTCTATGCTTGCTCAACGTGAAAAACAGCCTCAATTTAGAAGCCTGAGCTTTCGAGAGGTTGGTTCCAACTCTGGATCTACTCTGGGATCCTCAATGGATCCTTGGTCTAGATGGGGATCTTCTAACGGTAAGGTAGATTGGACTGCTAGTCCGGATGAATTGGGTAAGCTTCGTAGGTCATCTTCTTTCGAGCTTGGGAATAATGGCGAGGAGCCTGATGTGTCATGGGTTCAATCACTTGTCAGAGAATCTCCAACTGATGTGAAGGAGAAGTTAGCAGCCTCTGTCCCAGGTCTTGCAGCAACTCATTCCTTGGCTGACAGTTGA 2007 0.4554 MNHLTIQTEDSFASLHELAANNDTEGFKRLIECDPSSVDEIGQWYGRRKGSKQMVTEHRTPLMVAATYGSIDVMKLILSLSVDDVNRTCGFDKSTALHCAASGGASNAVDAVKLLLAAGADSNIRDANGDRPIDVIVVPPKLQDVKISLLELLSTDGSPIERNLRVSTVMSNSNLPPLSNSPENGSPSYAADIQLKLKANEAPAPSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTNEELRPLYVSTGSAVPSPRLCSSSAMDFGQAMNMLPSSPSSLSVMSPSPFTPPMSPPGNGVAHSSVPWPQQNVPSLHLPGSNLQCSRLRSSLNARDIPAEEFELLSDYDAQQQQLLNELSCLSQQSLNSNSLNRLGRLKIMAPSNLDDLFSAESSSPRFADQAMGATVFSPTHKSAVLNQFQQQQSMLSPVNTNFSSKTPEHPLLQASFGVQASGMMSPRNVEPISPMSARISMLAQREKQPQFRSLSFREVGSNSGSTLGSSMDPWSRWGSSNGKVDWTASPDELGKLRRSSSFELGNNGEEPDVSWVQSLVRESPTDVKEKLAASVPGLAATHSLADS* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01423 668 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Pte18g01423 668 MobiDBLite consensus disorder prediction 576 595 - -
Pte18g01423 668 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Pte18g01423 668 PANTHER UNKEMPT FAMILY MEMBER 17 644 IPR045234 -
Pte18g01423 668 MobiDBLite consensus disorder prediction 367 393 - -
Pte18g01423 668 SUPERFAMILY Ankyrin repeat 8 137 IPR036770 -
Pte18g01423 668 Gene3D - 271 334 - -
Pte18g01423 668 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Pte18g01423 668 Gene3D - 2 144 IPR036770 -
Pte18g01423 668 Pfam CCCH-type zinc finger 276 296 IPR041367 -
Pte18g01423 668 Coils Coil 433 453 - -
Pte18g01423 668 ProSiteProfiles Ankyrin repeat region circular profile. 57 83 - -
Pte18g01423 668 Pfam Ankyrin repeats (3 copies) 15 126 IPR002110 GO:0005515
Pte18g01423 668 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pte18g01423 668 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Pte18g01423 668 SMART ANK_2a 57 87 IPR002110 GO:0005515
Pte18g01423 668 SMART ANK_2a 10 40 IPR002110 GO:0005515
Pte18g01423 668 SMART ANK_2a 92 124 IPR002110 GO:0005515
Pte18g01423 668 ProSiteProfiles Ankyrin repeat profile. 57 83 IPR002110 GO:0005515
Pte18g01423 668 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01423 Pte-Chr18 25974574 25978420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01423 9 644 C2H2 Transcription Factor Family AT5G12850 55.521 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte18g01423 Ank_2 4.8e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01423 - - pvy:116109632 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01423 18 25974574 25978420 Pte18g01423 18 25974574 25978420 RCT