Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01417 ATGTCAGAGAGACCAGCTGGAGATAGGGGGTCGTTCGGCCGGGGGTTTGGTCGTGGCCGGGGCGACCGTGGCCGTGGCCGTCGTAGACCAGCTCGCCGTGAAGAAGAAGAGAAATGGGTACCGGTAACTAAACTTGGGCGTCTTGTTAAGGATGGCAAAATCAGGTCCCTTGAACAAATTTACTTGCACTCTCTTCCTATCAAGGAGCATCAGATTATCGATACTCTGGTTGGTCCATCACTCAAGGATGAGGTCATGAAGATCATGCCAGTCCAGAAACAGACTCGTGCCGGTCAGAGGACCCGCTTCAAGGCATTCGTGGTTGTCGGTGACACCAATGGACACGTCGGTCTAGGAGTCAAATGCTCCAAGGAAGTTGCTACTGCTATTCGAGGAGCTATCATTTTGGCCAAGCTGTCTGTGATCCCTGTGAGAAGGGGTTACTGGGGTAACAAGATCGGCAAGCCACACACTGTGCCTTGCAAGGTCACTGGAAAGTGTGGTTCTGTTACTGTCAGAATGGTTCCTGCTCCTCGTGGTGCTGGGATTGTCGCTGCCAGGGTTCCCAAAAAGGTTCTACAGTTTGCTGGTATTGAGGATGTGTTCACTTCCTCAAGGGGCTCCACTAAAACCCTTGGGAATTTCGTCAAGGCTACATTTGACTGTCTCCTGAAAACCTATGGTTTCCTCACTCCTGAATTCTGGCGGGAGACACGCTTCACCAGGTCACCATTCCAAGAGCACACAGACTTATTGGCCAAACCCATAGGCAAGCTTATTACACTCGAAGAGCCTGAGAGGGTTGAACCGGCTGTGCGAGCTGTAGCTTAG 831 0.5174 MSERPAGDRGSFGRGFGRGRGDRGRGRRRPARREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTRSPFQEHTDLLAKPIGKLITLEEPERVEPAVRAVA* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01417 276 MobiDBLite consensus disorder prediction 1 37 - -
Pte18g01417 276 ProSiteProfiles S5 double stranded RNA-binding domain profile. 81 144 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte18g01417 276 ProSitePatterns Ribosomal protein S5 signature. 98 130 IPR018192 -
Pte18g01417 276 Pfam Ribosomal protein S5, N-terminal domain 81 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte18g01417 276 SUPERFAMILY Ribosomal protein S5 domain 2-like 157 237 IPR020568 -
Pte18g01417 276 Gene3D - 144 236 IPR014721 -
Pte18g01417 276 Gene3D - 38 143 - -
Pte18g01417 276 NCBIfam 30S ribosomal protein S5 34 241 IPR005711 GO:0003735|GO:0006412|GO:0015935
Pte18g01417 276 FunFam 40S ribosomal protein S2 38 143 - -
Pte18g01417 276 PANTHER RIBOSOMAL S SUBUNIT 30 227 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte18g01417 276 FunFam 40S ribosomal protein S2 144 237 - -
Pte18g01417 276 Pfam Ribosomal protein S5, C-terminal domain 165 237 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pte18g01417 276 SUPERFAMILY dsRNA-binding domain-like 77 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01417 Pte-Chr18 25923795 25925517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01417 35 261 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 88.987 2.24e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01417 K02981 - csav:115709431 462.996