Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01400 ATGGGGAGAGGAAAAATTGAGATAAAGAAGATAGAAAATTTGAATAACAGGCAGGTCACATTCTCCAAACGCCGCAATGGTTTGCTTAAGAAAGCTAAGGAGTTGTCCATTTTATGTGACGCAGAGGTAGCTGTCATAATCTTCTCTGGTACAGGAAAGCTGTATGAGTTCTCAAGTACAAGCATGAACCATACAATTTCGAGGTATGGAAGATTGGAGCAGGACCATGCAAAGAACCCTAGTATTGAGCAACCAGTTCAGAATATGGAGCCCCAGACAGAAATGTTAAAGAATGAAATTATGCAACTTCGCTCAGCATACCTGCGGATGATGGGGAAGGAACTCAGTTGTTTGAGCTTCATTGAATTGCAGCACCTAGAAGAGCAATTGAGCGAAGGAATACATGCTGTAAAAGAGAAGAAGGAGGAAATATTTCTAGAGCAGCTTAAGAGGTCAAGGCATCAGGAGCAGATGGCCATCCTAGAGAATGAAGCTTTGCGTAAAAAGCTTGAGGAGTTACAACACAAGACAAACTCACCCTTCCGTGAATTCAATCCGGAAGATGGGACGCTTTCCTTTGTAGGATCAACACACAATTCTAATTGTGCTTCAGATGATAATGAGTTATCCCATACTTCCTTGCAGTTAGGGTTGTCAATGACGGCAGCATATGGTGTCAAAAGGAAAGCACAGAAGATAGAACCTTGCAATGACTCAGGAAGTCAAATAGTTTCATAG 738 0.4187 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSILCDAEVAVIIFSGTGKLYEFSSTSMNHTISRYGRLEQDHAKNPSIEQPVQNMEPQTEMLKNEIMQLRSAYLRMMGKELSCLSFIELQHLEEQLSEGIHAVKEKKEEIFLEQLKRSRHQEQMAILENEALRKKLEELQHKTNSPFREFNPEDGTLSFVGSTHNSNCASDDNELSHTSLQLGLSMTAAYGVKRKAQKIEPCNDSGSQIVS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01400 245 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g01400 245 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Pte18g01400 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Pte18g01400 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte18g01400 245 Coils Coil 123 143 - -
Pte18g01400 245 Coils Coil 151 176 - -
Pte18g01400 245 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Pte18g01400 245 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g01400 245 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pte18g01400 245 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01400 Pte-Chr18 25799083 25801736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01400 1 239 MADS-box Gene Family AT5G13790 45.565 1.63e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte18g01400 K-box 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01400 - - gmx:100792278 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01400 18 25799083 25801736 Pte18g01400 18 25799083 25801736 RCT