Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01397 ATGGATAGTCTTCTGAAAGATTTCGAATTAGAGCACAAGAATCCTTCTGTGGAAGCTCTGAGAAGATGGAGATCAGCGGTTTCACTGGTGAAGAATCCACGAAGAAGGTTTCGTATGGTTGCAGATCTTGAAAAACGCTCCGAAGCTGAACAGATTAAGCTCAAAATCCAGGAAAAAATTCGGGTCGCTCTTTATGTTCAAAAGGCGGCATTGCAGTTTATTGATGCTGGTGGCAGGGCTGATTACAGGCTATCAGATGAAGCAAGAGAAGCAGGTTTTGGGATCGATCCTGACGAGCTTGCTTCTATTGTCCGGAGTCATGACTACAAAGGCTTGAAAATACATGGTGGGCTAGAGGGAATTTCAAGAAAACTCTCTGTCTCGCCAAATGAAGGTGTTAGTGAAACTAACATAGAATCTAGACAACATATATATGGCACCAACCGTTATGCTGAGAAGCCTGCTCGAAGTTTTTGGGTATTTGTATGGGAAGCTTTGCATGACCTCACACTTGTTGTACTCATAGTGTGTGCTGTAGTTTCCATTGGAATAGGACTTGCCACTGAAGGGTGGCCAAAGGGTGTTTATGATGGTCTGGGTATCTTGCTTAGCATATTCCTGGTAGTTATTGTTACTGCTACCAGTGACTATAACCAATCATTGCAATTTAGGGATTTAGACCGTGAGAAGAAAAAAATCTTCATTCAAGTCAGTAGGGATGGGAAAAGGCAGAAGATTTCCATATATGATTTGGTGGTGGGAGATATTGTTCATCTATCTATAGGTGACCAAGTGCCTGCTGATGGTATATATTTGTCAGGATACAGCTTGGTGATTGATGAGTCAAGTCTGTCAGGTGAGAGTGAGCCAGTGAATGTGAATGATGAGAGACCTTTCCTTCTTTCAGGAACTAAAGTGCAAGATGGGTCAGGGAAAATGCTGGTTACAGCTGTTGGTATGAGGACTGAATGGGGAAAGCTGATGGAAACTCTCAATGAAGGAGGAGACGATGAGACACCTTTGCAAGTAAAACTGAATGGTGTTGCTACCCTTGTTGGTAAAATTGGTTTAAGTTTCGCTGTACTGACGTTTGTAGTGTTGACAGTAAGATTTCTCGTGGAAAAGGGTCTACGTGGTGAGTTTACTCATTGGTCTTCAACTGATGCTTTGACACTTTTGAATTATTTTGCTATTTCTGTAACTATCTTGGTAGTTGCTGTTCCGGAAGGGTTGCCCTTAGCAGTGACGTTGAGCCTTGCCTTTGCTATGAAAAAGCTAATGAGTGACAGAGCACTCGTGAGGCATCTCTCTGCATGCGAGACAATGGGTTCTGCAACTTGCATTTGTACAGATAAGACTGGAACGTTGACGACCAACCATATGGTAGTTGATAAAATATGGATATGTGAGAAATCGATGCAGGTAAAAGGTAACGAGGAATCAATAAAATCAGAATTATCTGAAAATGCCGTGAGTATCCTTTGGCAGGCTATCTTTCAAAATACTACATCTGAAGTGGTAAACGATAAAGATGGAAAACGATCTATTTTAGGATCTCCAACAGAATCTGCTATGCTTGAATTTGGTTTAGCCCTGGGTGGTGATTTCGACTCGCAGCGTAAAGAGTTTAGGATACTCAAAGTAGAACCTTTCAACTCAGTAAAAAAGAAGATGTCTGTTCTGGTGGCTCTCCCAGATGGAAGGGTACGAGCTTTCTGCAAAGGTGCATCAGAAATAGTACTTGGCATGTGTAACCAGATTGTAGCTACTAGTGGCGAACCTATTGAGCTTCCTGAGGATCAGGCCAGGAATGTAACTGGTGTTATAAATGATTTTGCCTCTGAAGCTTTGAGAACAATTTGCCTGGCGTACAAGGACCTAGATGAAAGTCCAAGTGAAACCAATTTACCTGATAATGGTTACACACTGGTAGCTATTATAGGAATTAAAGACCCTGTTCGCCCTGGGGTTAAGAATGCTGTCAAGACTTGTCAAGCAGCTGGCATAACTGTTCGTATGGTTACTGGAGATAATATAAATACTGCTAAGGCAATTGCTAAAGAATGTGGTATACTCACTTCGGATGGTATTGCCATAGATGGATCAGAATTTCGCAAAATGTCTCCTGAGCAGATGAAGGACGTCATTCCAAGAATCCAGGTAATGGCAAGATCCTTGCCGCTGGACAAACATACATTAGTAACCAATCTGAGGAACATGTTTGGTGAAGTTGTTGCTGTAACTGGTGACGGGACCAATGATGCTCCCGCGTTGCATGAGTCAGACATTGGTCTTGCTATGGGCATAGCAGGAACAGAGGTGAGTCTCTTTATTTGTTTGGATGGCGACTTCCATAGGATTGAATTTAGTCCTCTTGTTTATCGCCGATTTCTGTAA 2397 0.423 MDSLLKDFELEHKNPSVEALRRWRSAVSLVKNPRRRFRMVADLEKRSEAEQIKLKIQEKIRVALYVQKAALQFIDAGGRADYRLSDEAREAGFGIDPDELASIVRSHDYKGLKIHGGLEGISRKLSVSPNEGVSETNIESRQHIYGTNRYAEKPARSFWVFVWEALHDLTLVVLIVCAVVSIGIGLATEGWPKGVYDGLGILLSIFLVVIVTATSDYNQSLQFRDLDREKKKIFIQVSRDGKRQKISIYDLVVGDIVHLSIGDQVPADGIYLSGYSLVIDESSLSGESEPVNVNDERPFLLSGTKVQDGSGKMLVTAVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATLVGKIGLSFAVLTFVVLTVRFLVEKGLRGEFTHWSSTDALTLLNYFAISVTILVVAVPEGLPLAVTLSLAFAMKKLMSDRALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKIWICEKSMQVKGNEESIKSELSENAVSILWQAIFQNTTSEVVNDKDGKRSILGSPTESAMLEFGLALGGDFDSQRKEFRILKVEPFNSVKKKMSVLVALPDGRVRAFCKGASEIVLGMCNQIVATSGEPIELPEDQARNVTGVINDFASEALRTICLAYKDLDESPSETNLPDNGYTLVAIIGIKDPVRPGVKNAVKTCQAAGITVRMVTGDNINTAKAIAKECGILTSDGIAIDGSEFRKMSPEQMKDVIPRIQVMARSLPLDKHTLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVSLFICLDGDFHRIEFSPLVYRRFL* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01397 798 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Pte18g01397 798 SFLD Haloacid Dehalogenase 431 787 - -
Pte18g01397 798 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 443 IPR023298 -
Pte18g01397 798 Pfam haloacid dehalogenase-like hydrolase 447 761 - -
Pte18g01397 798 SUPERFAMILY Calcium ATPase, transduction domain A 234 330 IPR008250 -
Pte18g01397 798 Gene3D - 315 461 - -
Pte18g01397 798 Gene3D - 462 647 IPR023299 GO:0000166
Pte18g01397 798 Gene3D - 15 76 - -
Pte18g01397 798 SMART Cation_ATPase_N_a_2 114 186 IPR004014 -
Pte18g01397 798 Pfam Cation transporter/ATPase, N-terminus 116 181 IPR004014 -
Pte18g01397 798 NCBIfam calcium-translocating P-type ATPase, PMCA-type 112 775 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pte18g01397 798 NCBIfam HAD-IC family P-type ATPase 386 473 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pte18g01397 798 NCBIfam HAD-IC family P-type ATPase 201 370 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pte18g01397 798 Pfam E1-E2 ATPase 235 427 - -
Pte18g01397 798 Gene3D - 648 790 IPR023214 -
Pte18g01397 798 Gene3D - 235 314 - -
Pte18g01397 798 PRINTS Sodium/potassium-transporting ATPase signature 442 463 - -
Pte18g01397 798 PRINTS Sodium/potassium-transporting ATPase signature 199 219 - -
Pte18g01397 798 PRINTS Sodium/potassium-transporting ATPase signature 571 589 - -
Pte18g01397 798 PRINTS P-type cation-transporting ATPase superfamily signature 667 677 - -
Pte18g01397 798 PRINTS P-type cation-transporting ATPase superfamily signature 748 767 - -
Pte18g01397 798 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Pte18g01397 798 PRINTS P-type cation-transporting ATPase superfamily signature 645 656 - -
Pte18g01397 798 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Pte18g01397 798 FunFam Calcium-transporting ATPase 15 75 - -
Pte18g01397 798 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 657 IPR023299 GO:0000166
Pte18g01397 798 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Pte18g01397 798 PANTHER CATION TRANSPORTING ATPASE 85 784 - -
Pte18g01397 798 SFLD p-type atpase 431 787 IPR044492 -
Pte18g01397 798 FunFam copper-transporting ATPase 1 isoform X2 647 692 - -
Pte18g01397 798 FunFam Calcium-transporting ATPase 213 332 - -
Pte18g01397 798 SUPERFAMILY HAD-like 437 775 IPR036412 -
Pte18g01397 798 FunFam Calcium-transporting ATPase 459 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01397 Pte-Chr18 25756768 25764060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01397 56 787 Primary Pumps ATPases AT3G57330 71.875 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01397 K01537 - qsa:O6P43_006482 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01397 18 25756768 25764060 Pte18g01397 18 25756768 25764060 RCT