Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01393 ATGGACCATCACAGAAGGCACACCAAAGATTCGCTCTCATATTCAACCCTCTTCAACCTTGAGCCTTTGATGAACTTTCGGCTTCCCCAACCAGATGACGATTTTGATTATTATGGCAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGCGGTGCTACTGCAAACCACATTAATGGGACTATACGTGACGGCAAATTAGGATTGTCTAAAAAAAGAAGGTGGTCTGAAAACAGCGACGGTGAGGAAAAGGGAGCTTACTACGGAACATATATGACAGAGGACAGATACCGTACAATGCTTGGTGAACATATTCAGAAATGCAAGAGAAGATTCAAGGACACCTCGACAAGTCCTGCCCAAACACGTACAGGTGGTTCAGTTCCAAAGAGTAGTGTTGTGTCAAAAGTCTCAAAGTTGAGTAACGAGTACCTGGGCAGTTTACATGCTGTTGAAAGTGCATCTGAGTGGGCTAGTGATGCTAATCCTCAGAAAGGAGGCCACCTTCGCGACCCCGAATTCACAACACAATATGGTACTGACAGGGTTACATATGAACCAGCTTCCTTGGACATTGGGGATGGGATTACTTACAGGATGCCCCCAACATATGATAGATTGGCTGCAATGCTGAACTTGCCAAGTTTCTCTGAGATCCAGGTGGAGGAATTTTACTTAAAGGGTACGCTGGATTTGGGATCCTTGGCCAAAATGATGGAGGCTGATAAAAGTCTTGGGTGTAGAAACCGTATTGGAATGGGAGAGCCCCTACCAAAATATGAATCACTTCAGGCCAAATTAAAGGCCTTAGCATCTTCAAACTCCCCTCATAATTTCAGTCTCAAAATTACTGATATTGATTTGAATTCCTCAATTCCGGAGGGTGCTGCTGGACGTATAAGAAGGTTGATTCTATCTGAGAGTGGTGCATTGCAGGTTTACTATGTCAAGGTTTTGGAGAAATGTGAAACATATGAGTTGATTGAGAGGAGCCTGCCCAAAAAGGAAAAGGTAAAGAAAGATCCTTCTCTGATTGAGAAGGAGGAAATGGAGAGAATTGGAAAGGTTTGGGTGAACATTGTACGAAGAGACATACCGAAGCATCATAGAATGTTCACTACTTTGCATCGGAAACAACTGGTTGATGCTAAGAGGTTTTCTGAGAATTGTCAAAGAGAGGTTAAAATGAAGGTTAGTAGATCTCTGAAATTGATGAGGTCTGCTCCAATTCGCACCAGGAAATTAGCAAGAGACATCATGCTGTTTTGGAAACGAGTTGATAAGGAGATGGCAGAAGTACGGAAAAGAGAGGAGAAAGAAGCAGCTGAAGCATTGAGGAGGGAACAGGAGCTTCGAGAAGCCAAGAGACAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTATATAGCCACTTTATGCAGAACAAGTCAAATTTACTTTCTTCAGAGACTGTACCTGCAGGAGATGAAAAGGATGACAATCAAGAAGCCTTGCTTGACTCTGATGAGAAACCTGATGATGACGATGACTTTGAAGAGGCCGAACTGAAGAAGGAAGCACTGAAAGCTGCACAAGAAGCTGTCTCAAAGCAGAAAAAATTGACAAGTGCCTTTGACAGTGAATGCTCTAAGCTGCGCCAAGCTGGTGAAGCGAGTGCACTTTCCGAAGATGTTGCTGGAGCCAGTAACATAGATTTACATAACCCTTCAACCATGCCTGTTGCATCAACAGTTCAGACTCCACAATTATTTAAGGGTTCTCTCAAAGAATATCAATTGAAGGGTCTTCAGTGGCTTGTTAATTGCTACGAGCAGGGCCTAAATGGTATACTTGCTGATGAGATGGGTCTTGGGAAGACCATTCAGGCTATGGCATTTCTAGCACATTTAGCTGAGGAAAAAAACATATGGGGGCCTTTTCTCATTGTTGCACCTGCATCTGTATTGAACAATTGGGTTGATGAACTCAATCGCTTCTGCCCGACCTTGAGTGCACTCCCTTATTGGGGTGGTCTTCAAGACCGAGCTGTTCTTAGAAAAACTATTTCTCCAAAAGACCTTTATCGCAGGGATTCAAAATATCACATTGTGGTTACGAACTACCAGTTACTTGTATCCGATGAGAAGTATTTTCGGCGGGTGAAGTGGCAGTATATGGTGTTAGATGAAGCCCAGGCAATTAAGAGTTCTACAAGTATAAGATGGAAGACGCTTCTTAGTTTCAATTGTCGGAATCGGTTGCTACTTACAGGAACACCTATTCAGAATAATATGGCTGAGTTGTGGGCCCTGCTACACTTTATTATGCCGACTTTGTTTGATAGCCATGAGCAATTCAATGAATGGTTTTCAAAAGGTATTGAGAATCATGCGGAGCATGGGGGTACTTTGAATGAGCACCAACTGAATAGATTGCATTCAATCTTGAAGCCTTTTATGCTGCGACGACTTAAAGCAGATGTGATTTCTGAGATGACCAGGAAAACTGAGGTCACTGTACACTGCAAATTGAGTTCTCGGCAGCAAGCTTTCTACCAGGCAATCAAGAACAAGATATCCCTTTCTGAGTTGTTTGATGGAAACCGTGTGCAATTTGAAAGGAAACTTCTAAATTTAATGAACATTGTCATTCAACTGAGGAAGGTCTGCAACCATCCAGAGTTGTTTGAGAGAAGTGAGGGAACTACTTACTTTTACTTTGGCGAGATTCCAAATTCTCTTCCACCTCCTCCTTTTGGGGAGTTGGAGGACATTTACTACTCGGGAGATCGGAATCCCATATCATACAAGATACCAAAGCTAGTGCATCAGGACCTTATTAGAAGTTCCGAATTGCGTTTTTCAGCTATCGGGTCTCATGCCAGTGGAGATTTCTTTCACAAACATTTTTGTGTATTCTCACCAGAAAATGTCTATCGATCTGTCTTCTCGGAGGAGGATAGCTCGTTTGAATTGTTTGGTAGTGGAGCTTTTGGTTTTACCCGCTTGATGGATTTGGGACCAGATGAAGTAACATTTCTTGCCTCATGTTCTCTAATGGAGAAAATATTATTTTCCATTATGAGATGGGACCGGAAATTTTTGGATGAAATGATTGACTCTCTTGGGAAAACAATGGATGAAGATCCTGAATTAGGTAACATTGGAAAGGGAAAAGTGCGGGCCGTCACACGAATGTTACTATTGCCACCAAGAACTGAGACTAATATGTTCAGAAGTAAATTCGCAACTGGGCCTGGTCATTCACCATATGAAGCATTGGTTTCCTCTGATCAAGATAGGCTTTCATCCAGCGCAAGACTTCTTCATTCTGCATATACATATATCCCTCGAAGTAGAGCCCCCCCGATTGGTGCACACTGTTCTGATAGGAACTTCACCTATAAAATGATTGAAGAACTACATAATCCCTGGGTTAAAAGATTGTTTGTTGGATTTGCACGAACATCTGAGCGCAATGGGCCAAGAAAGCCGGATGGTCCTCATCATCATCTTATTCAAGAGATAGATTCTGAACTCCCAGTTTCTCAGCCTGCACTTCAGTTGACTTATGAAGTTTTTGGGTCTTCTCCACCTACACGTAGTTTTGACCCTGCCAAGTTACTCACAGACTCTGGGAAGCTTCAGACGCTTGATATATTATTGAAACGTTTGCGAGCGGAGAACCACAGAGTACTCTTATTTGCTCAGATGACAAAGATGCTGAACATCCTTGAGGATTACATGAACTACAGAAAATATAAATATCTTAGGCTTGACGGATCGTCTACCATCCAGGACCGGAAGGACATGGTGAATGATTTCCAGCAAAGGAGTGATATTTTTGTATTTTTGCTTAGTACAAGAGCTGGTGGAGTAGGCATTAACTTGACAGCTGCCGATACCGTTATATTCTATGAGAGCGATTGGAATCCCACATTGGACTCTCAAGCAATGGATAGAGCTCATAGATTGGGTCAAACAAAAGATGTTACTGTCTACCGACTTATATGCAAAGATACTGTTGAGGAGAAGATCCTCCAGAGAGCAAGTCAGAAAAGCACCGTCCAGCAGCTTGTCATGACCGGTGGACATGTTCAGGGTGATATTTTGGCTCCCGAGGATGTTGTATCTTTGCTTCTGGATGATGTCCAACTGGAGCAAAAGTTGAAGGAAATTCCATTTCAGGGAAAGGATAAACAAAAGAAGAAAAATTCAACGAAGGGTGTATGGGTAAATGATGACGTTGCATCGTTAGAGGATCCAACGAACCCTGGTCTTCAGCAAACAGAACGTGAATCTTCTCAGGAACCTGGGACATCCAAGTCTGTTAACAAGAAGAGGAAAGGAACTTCTGGACAAAGTATGCCAAGGCCTAAGAATTCCCAGAACACAACTGAACTTAGCCCTGCACTGGACAACGAAATTGACGATTTCAGTATTGATCTACAAGGCGAAAAGCCCAAGAGGCTAAAAAGGCTAAAGAAAGGCACAAATGGAGAGTCTGATGATACTTCTACTTTAGTCCCTGAACAAGCCCGATATGCTCTTGCACATGATATTGGTTCTGGTGATGCTAAAGCAGAGGCAGGTGAAGATTCCTAA 4590 0.4268 MDHHRRHTKDSLSYSTLFNLEPLMNFRLPQPDDDFDYYGNSSQDESRDSQGGATANHINGTIRDGKLGLSKKRRWSENSDGEEKGAYYGTYMTEDRYRTMLGEHIQKCKRRFKDTSTSPAQTRTGGSVPKSSVVSKVSKLSNEYLGSLHAVESASEWASDANPQKGGHLRDPEFTTQYGTDRVTYEPASLDIGDGITYRMPPTYDRLAAMLNLPSFSEIQVEEFYLKGTLDLGSLAKMMEADKSLGCRNRIGMGEPLPKYESLQAKLKALASSNSPHNFSLKITDIDLNSSIPEGAAGRIRRLILSESGALQVYYVKVLEKCETYELIERSLPKKEKVKKDPSLIEKEEMERIGKVWVNIVRRDIPKHHRMFTTLHRKQLVDAKRFSENCQREVKMKVSRSLKLMRSAPIRTRKLARDIMLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETVPAGDEKDDNQEALLDSDEKPDDDDDFEEAELKKEALKAAQEAVSKQKKLTSAFDSECSKLRQAGEASALSEDVAGASNIDLHNPSTMPVASTVQTPQLFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWVDELNRFCPTLSALPYWGGLQDRAVLRKTISPKDLYRRDSKYHIVVTNYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRLKADVISEMTRKTEVTVHCKLSSRQQAFYQAIKNKISLSELFDGNRVQFERKLLNLMNIVIQLRKVCNHPELFERSEGTTYFYFGEIPNSLPPPPFGELEDIYYSGDRNPISYKIPKLVHQDLIRSSELRFSAIGSHASGDFFHKHFCVFSPENVYRSVFSEEDSSFELFGSGAFGFTRLMDLGPDEVTFLASCSLMEKILFSIMRWDRKFLDEMIDSLGKTMDEDPELGNIGKGKVRAVTRMLLLPPRTETNMFRSKFATGPGHSPYEALVSSDQDRLSSSARLLHSAYTYIPRSRAPPIGAHCSDRNFTYKMIEELHNPWVKRLFVGFARTSERNGPRKPDGPHHHLIQEIDSELPVSQPALQLTYEVFGSSPPTRSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIQDRKDMVNDFQQRSDIFVFLLSTRAGGVGINLTAADTVIFYESDWNPTLDSQAMDRAHRLGQTKDVTVYRLICKDTVEEKILQRASQKSTVQQLVMTGGHVQGDILAPEDVVSLLLDDVQLEQKLKEIPFQGKDKQKKKNSTKGVWVNDDVASLEDPTNPGLQQTERESSQEPGTSKSVNKKRKGTSGQSMPRPKNSQNTTELSPALDNEIDDFSIDLQGEKPKRLKRLKKGTNGESDDTSTLVPEQARYALAHDIGSGDAKAEAGEDS* 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01393 1529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 1475 1495 - -
Pte18g01393 1529 Gene3D - 1178 1428 IPR027417 -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 31 63 - -
Pte18g01393 1529 PANTHER HELICASE SRCAP-RELATED 131 522 - -
Pte18g01393 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1385 IPR027417 -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 485 514 - -
Pte18g01393 1529 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Pte18g01393 1529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1212 1396 IPR001650 -
Pte18g01393 1529 FunFam Putative DNA helicase INO80 562 840 - -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 117 133 - -
Pte18g01393 1529 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Pte18g01393 1529 Gene3D - 563 842 IPR038718 -
Pte18g01393 1529 CDD SF2_C_SNF 1200 1332 - -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 110 133 - -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 155 178 - -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 42 57 - -
Pte18g01393 1529 Pfam SNF2-related domain 605 891 IPR000330 GO:0005524|GO:0140658
Pte18g01393 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 1392 1505 - -
Pte18g01393 1529 SMART helicmild6 1238 1321 IPR001650 -
Pte18g01393 1529 Pfam Helicase conserved C-terminal domain 1212 1321 IPR001650 -
Pte18g01393 1529 Coils Coil 513 533 - -
Pte18g01393 1529 SMART ultradead3 586 781 IPR014001 -
Pte18g01393 1529 Coils Coil 428 467 - -
Pte18g01393 1529 MobiDBLite consensus disorder prediction 1417 1466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01393 Pte-Chr18 25720394 25731014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01393 611 899 RAD5 or RAD16-like Gene Family AT5G43530 30.117 5.15e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte18g01393 SNF2_N 6.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01393 K11665 - gmx:100780615 2213.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01393 18 25720394 25731014 Pte18g01393 18 25720394 25731014 RCT