Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01380 ATGTTCCTTGAAGACTCACTAAGATCTCTATCACTGGATTACCTGAACCTGCTCATAAATGGACAAGCCTTCAGCGACGTGACCTTCAGCGTAGAAGGTCGTTTAGTCCATGCTCACCGCTGCATCCTTGCTGCAAGAAGCCTCTTCTTCAGGAAATTCTTCTGTGCTCCGGACTCTCCATTTGGGATCGATCCATCAGGGACTCGGGTCAGCTCAGCCACTTCCATGTCCAAACAACAAGCAGCTGGGGTCATACCGGTCAACTCAGTGGGCTACGAGGTGTTCCTGTTGCTGTTGCAGTTCCTTTACAGTGGACAAGTCTCTGTTGTGCCTCAAAAGCATGAGCCAAGGCCTAATTGTGGTGAAAAAGGTTGTTGGCACACGCATTGCACCTCAGCAGTTGATCTTGCCCTTGACACTCTTGCAGCTGCTAGATCCTTTGGTATCGAGCAACTTGCATTGCTTACTCAGAAACAATTGACCAGCATGGTGGAGAAGGCCTCAATCGAAGGTGTAATGAAAGTACTAATAGCATCAAGGAAGCAAGACATGCATCAGCTTTGGACCACTTGTTCCCACCTTGTTGCTAAGTCTGGCCTCCCTCCTGAAGTTCTTGCCAAACACCTTCCAATCGACATTGTCGCCAAGATTGAAGAGCTTCGTCTCAAAACCTCTCTAGCTCGTCGCTCAAGCTTGATGACTCCCCACCCTCATTATCACCATGATCTTGGCGTTGCAGCAGAAATTGAGGACCAAAAGATTCGAAGAATGAGAAGGGCACTCGATTCGTCAGATGTAGAACTAGTTAAGCTCATGGTCATGGGGGAAGGCCTAAATTTAGATGAAGCATTAGCATTGCACTATGCCGTAGAGAACTGCAGCCGAGAGGTAGTGAAAGCATTGCTTGAGCTCGGTGCTGCTGATGTGAACTACCCTACAGGGCCTGCTGGCAAAACCCCACTCCACATTGCTGCAGAGATGATCTCTCCTGACATGGTGGCTGTACTTTTGGATCATCACGCTGATCCAAATGTTCGTACAGTCGATGGAGTCACTCCTCTTGATGTACTCCGAACCCTAACCTCTGATTTTCTCTTCAAAGGAGCAATACCTGGACTAACGCACATAGAACCCAACAAGCTAAGGTTGTGCTTAGAGCTTGTTCAGTCAGCTGCTCTTGTAATTTCACGAGAAGAAGGTAATGCAAACCCTTGTACTTCAACAGATATTTATCCGCCAATAAGTGAAGATCATAATTGCAGCAGCGGCAGTAATGTCGCTAACCTTAACCTGGGTTCAAGTGTAGTTTATCTTAATCTAAGTGCCACTGATTCGGCTCCAATGGTTTCAAGACTGGATGGAGATGATGACACTAATCGCAATAGCCAGAGAGAACATGTTTTGCATCGTCATGGAGCACAAGGTGGCTGTGACCCGACAATGTACCATCATTCACGTAATTTCTGA 1467 0.4717 MFLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDSPFGIDPSGTRVSSATSMSKQQAAGVIPVNSVGYEVFLLLLQFLYSGQVSVVPQKHEPRPNCGEKGCWHTHCTSAVDLALDTLAAARSFGIEQLALLTQKQLTSMVEKASIEGVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKTSLARRSSLMTPHPHYHHDLGVAAEIEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPTGPAGKTPLHIAAEMISPDMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLFKGAIPGLTHIEPNKLRLCLELVQSAALVISREEGNANPCTSTDIYPPISEDHNCSSGSNVANLNLGSSVVYLNLSATDSAPMVSRLDGDDDTNRNSQREHVLHRHGAQGGCDPTMYHHSRNF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01380 488 SUPERFAMILY Ankyrin repeat 275 359 IPR036770 -
Pte18g01380 488 SMART BTB_4 25 164 IPR000210 GO:0005515
Pte18g01380 488 MobiDBLite consensus disorder prediction 450 488 - -
Pte18g01380 488 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Pte18g01380 488 Gene3D - 246 364 IPR036770 -
Pte18g01380 488 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
Pte18g01380 488 SMART ANK_2a 316 345 IPR002110 GO:0005515
Pte18g01380 488 SMART ANK_2a 281 311 IPR002110 GO:0005515
Pte18g01380 488 FunFam regulatory protein NPR5 isoform X2 247 364 - -
Pte18g01380 488 CDD BTB_POZ_NPR_plant 8 164 - -
Pte18g01380 488 Gene3D Potassium Channel Kv1.1; Chain A 5 197 IPR011333 -
Pte18g01380 488 ProSiteProfiles Ankyrin repeat region circular profile. 316 346 - -
Pte18g01380 488 MobiDBLite consensus disorder prediction 450 472 - -
Pte18g01380 488 Pfam Domain of unknown function (DUF3420) 199 258 IPR024228 -
Pte18g01380 488 ProSiteProfiles Ankyrin repeat profile. 316 348 IPR002110 GO:0005515
Pte18g01380 488 SUPERFAMILY POZ domain 7 162 IPR011333 -
Pte18g01380 488 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Pte18g01380 488 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 485 IPR044284 GO:0099402
Pte18g01380 488 Pfam Ankyrin repeats (3 copies) 264 346 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01380 Pte-Chr18 25624939 25627373 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pte18g01380 BTB 3.2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01380 K14508 - qsu:112012060 796.964