Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01353 ATGTCCATGGTGATGAAGTCAGGGTCACTAAACTACTGGAGAGATTACTTTAGGACGTCAAGCTATGATGTATTTGACATAATTGAGCACGCAGTGTTGGTGGCCGCTTCTGATTGTCCAAAGGAGTTCAGATTGCGGAGGGATCGAATTGCAGAACTTTTATTCTCGTCTAGATTGACTCGTTGTTCAGGATGTGACCAAGTTCATTTGGCAGTGCCTGCTGCTGATGAGGAAGATGGAGTCTGTAAGAGTGGTTTGGATCGACATGGCGGTGAATTTGAGGCTGGGGCTAGTAAAGAGAGTAAAAGTGACGGTAGCAGAGGTGATCATGCAGACTTCAATGATCACCAAGGTTTTAGCAATTATAGCTACGGCGAAGCTGAGGCATTGACTGATGAGATTGAGGAGGTGTCTCAGATTATTGGGGAGGTTTTAAGGATCAAAAACATTCTCCATAATAGTCAAGAAGAGTCTGATTCGGTATTGTACGAATCACTGAGGCAGCTTCAGCTAATGGCTCTCACTGTGGATATTCTGCAGGCCACAGAGATTGGGAAGGTTGTCTCTCGTCTACGCAAGCATGGATCAAAGGAGATTTGCAGTCTTGCTAGGACTCTATACATTGGCTGGAAAGAGTTGGCAGAGGAGTGGCTCAAATCTACAACAGCTATTACAGCTTCGGAAGGTACTCCAGATTCTGTCAATCCATCCGTCCTGGATGAGGAAGAAGGGCTTCCATCTCCTCCTCTGGATGAAGCATTTTTGGCCACACAAACTGGTTCAATAGATTTCTCACAGATCTTTGATGGCATGGATGACGATGGAAATCCTCGAAACTGTGGGCAAATCATCAAGAGCCATGAAAATGGAAGGAAAACAACTCTTGATAATCAAAACCCTATAAAGAGGAAACAACAGTGTTCTGATTCGTTTCACGTCGTGGCGGATAAAGGCAAAAGTAATGAAGTGAAGAAACTAGAGAATGTTGCTAAGCTAACCAAGACGTCAAATGCTCCTATAAAGCAAGAAAAATTGTCAAATTCTGATTCTGGACCTGGAAGACAACCCAAATTTGTGAAAGAGCAGAATCGAAGTAGCAATGTCCGTTCCATGGGAAGAGGAGACAAGAATGGAATCCAAAAGACTCCTGCATGTGCTCAGCAAGATAAGTCCAAATGTTCTGATGAGGCTGCAGTGCAAATGAAGCTGGAAGCCACAAAGAGAAAACTTCAAGAGCGTTACCAACAAGTTGAGACTGCAAAAAGGCAACGGACGATACAAGTGATGGACTTGCATGATCTCCCAAAGCAGGGGATGGGACACAGGAATCCACACGTCAAACCTGGAAACCACAACCGTAACTGGTCTCAGGGAAGACGTTAG 1383 0.4454 MSMVMKSGSLNYWRDYFRTSSYDVFDIIEHAVLVAASDCPKEFRLRRDRIAELLFSSRLTRCSGCDQVHLAVPAADEEDGVCKSGLDRHGGEFEAGASKESKSDGSRGDHADFNDHQGFSNYSYGEAEALTDEIEEVSQIIGEVLRIKNILHNSQEESDSVLYESLRQLQLMALTVDILQATEIGKVVSRLRKHGSKEICSLARTLYIGWKELAEEWLKSTTAITASEGTPDSVNPSVLDEEEGLPSPPLDEAFLATQTGSIDFSQIFDGMDDDGNPRNCGQIIKSHENGRKTTLDNQNPIKRKQQCSDSFHVVADKGKSNEVKKLENVAKLTKTSNAPIKQEKLSNSDSGPGRQPKFVKEQNRSSNVRSMGRGDKNGIQKTPACAQQDKSKCSDEAAVQMKLEATKRKLQERYQQVETAKRQRTIQVMDLHDLPKQGMGHRNPHVKPGNHNRNWSQGRR* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01353 460 MobiDBLite consensus disorder prediction 93 114 - -
Pte18g01353 460 MobiDBLite consensus disorder prediction 275 304 - -
Pte18g01353 460 MobiDBLite consensus disorder prediction 226 247 - -
Pte18g01353 460 Pfam TFIIS helical bundle-like domain 166 212 IPR017923 -
Pte18g01353 460 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 5 448 IPR044805 -
Pte18g01353 460 Coils Coil 400 423 - -
Pte18g01353 460 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Pte18g01353 460 MobiDBLite consensus disorder prediction 93 116 - -
Pte18g01353 460 MobiDBLite consensus disorder prediction 282 304 - -
Pte18g01353 460 MobiDBLite consensus disorder prediction 334 373 - -
Pte18g01353 460 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 227 IPR035441 -
Pte18g01353 460 MobiDBLite consensus disorder prediction 434 460 - -
Pte18g01353 460 CDD TFIIS_I 141 215 - -
Pte18g01353 460 MobiDBLite consensus disorder prediction 334 392 - -
Pte18g01353 460 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 227 IPR035441 -
Pte18g01353 460 SMART TFS2_5 144 216 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01353 Pte-Chr18 25403132 25405997 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pte18g01353 Med26 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01353 - - zju:107431544 577.4