Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01352 ATGGCAGAGGACGACGAAATTTACAGCCAGAATGAGGACAACCCCTCGCAATCACAACCATACTCACCCTCTTCTTCAACTGATACCTACATGGTCGGTTTTGTCATAGCAAATATTGTCGGTGTGCAGCACTATACCGGCAGAATTAATGGGCGTGAAATGGTGTGTTTGGTCAGAGAACCTCTCAACCCATACGATGGAAACGCAATCAAAGTACTCAACACCAGGAATGTTCAGGTGGGTCATATCGAGAAGACCGTCGCTGCTGTTCTCTCACCCATGATAGACACGGAGACCATTTTCATTGAAGGAATTGTGCCCAACACTCGTTCTTCTGACAACCGCTATAAGATTCCTTGTCAAGTTCACATCTTTTCGAGGATGGAACTCCTTTCCGATGTTAAAACCTTGATTTTAGCAAGTGGGTTGCAGTTGATTTCGGATTCTGATGTTTCTTTCACCTTGTCTGCTGCTATGGCGGTTAAAGAGACTGCAGGTAGCAAGGGCAGGAAAGAAATCAAAAGCGTGGACCATATTTTCGATATGGTTGACAAGGATGCCAGCAAAAGGCGTGATTTGGTGGCACTGGAGCCACCCAAAAATGCTATAAAGTCTGAACTCTTTGTGCATCAAAAGGAGGGATTGGGGTGGCTGGTACATAGGGAGAATTCTGAGGAGTTGCCTCCATTTTGGGAAAAGAGAGATAGGTCCTTTGTCAACGTGTTAACTAATTATAAAACAGATAACAGACCAGAACCTTTGCGCGGTGGTATTTTTGCAGATGATATGGGACTGGGCAAGACTTTAACTTTGTTATCTCTGATTGCTTTTGATAAGTATGGTTGTCCGATACCTTGTCCAATAGATAATACACGTGGAGATGAATTGGATGAGGAGTTTTCAGTTTCTGGTGGTAAGAAGGGTAAACGGGGAAGGCCAAAAAAGAATACTGGGTCACAGAAGAAAAGCAAGACTGAAGGCTCCAAGTTGAGTACTGTAGCTTACGGAAAATCTGTAGATGGAGTTGATAAGTCTTTTACTGATATGGAGGTTCAAACTACATTAGTTGTGTGCCCTCCTTCAGTGTTTTCGACATGGGTAAAGCAACTAGAACAGCACACTGTACCTGGCACACTGAAGATGTATATGTATTATGGGGATAGGAGGACTGATGATGCTGAGGAACTTAAGAAATATGATATAGTGTTGACAACGTATACTATATTGGCTACTGAAAATGCCTGGCCGAACTCACCAATGAAGATGCTAGAGTGGAGGAGAGTAATTTTAGATGAAGCACATATTATTAAAAACGCAAATGCTCAACAAAGTCAAGCTGTCTGTAATCTGAAAGCTAAGCGAAGGTGGGTGGTTACTGGGACACCTATTCAAAATGGATCATTTGATCTATTTTCTTTGATAGCATTTTTGCATTTTGAGCCCTTTTCAGTAAAGTCTTACTGGAAAGCACTCGTGCAACGCCCTCTTACTCAGGGGATGCAGCAGGGTCTCAAACGTTTGCAGGTTCTTATGGCAACAATATCTTTGCGTAGAACAAAAGATAAGGGACTGATAGAATTGCCACCTAAGACAGTGGAGACACATTTTGTGGATCTCTCAAAGAATGAGAGAGAGTTATATGATAAGATAGAAGGACAGGCAAAAAACATACTGCGTGGTTATATTGAAGGCAAAGATTTCTTGCGCAACTATTCAACAATTCTCAGCATCATTTTGCGTCTTCGTCAAATCTGTACTGATATGGCCTTGTGCCCTTCAGATCTTGGATCACTTTTCTCTTCAAGTAATATTGAAGATGTCTCCAATAACCCAGAGTTGCTGAAAAAATTGGTCGAGGTCTTGCAAGATGGTGAAGATATTGACTGTCCAATTTGTATTTCTTCACCATCTGATATTGTGATTACATGTTGTGCCCACATATTTTGCCGGGCATGTATCCTAAAAACGTTGCAGCGCAGCAGAGCCTGTTGCCCCCTCTGTCGTCGTCCTCTTTCAGAGTCTGACCTATTTTCAGCGCCTCCTGAGTCTTCAGAGACTAATGATGATGCACCATCATCATCGGAGATAGGCACATCTTCAAAAGTTTCTGCTCTTATGCAGCTTCTGTTGGCATCAAAAGATCAAAACACAAGCACAAAGTCAGTAGTATTTTCACAGTTTCAGAAGATGTTGGTGATACTTGAGGGACCGCTAAAAGCGGCAGGCTTTAAGGTTTTACGCATCGATGGTATGATGAATGCTAAGAAAAGGGCTCAGGTCATAGAAGAGTTTTCCGACTCAACGGAAGGCAGCCCCATGGTTTTGCTGGCAAGTCTCAAGACTTCAAGTGCAGGAATTAACCTTACAGCTGCCTCTAGAGTATTCTTGTTCGAACCCTGGTGGAACCCAGCAGTTGAGGAGCAGGCAATGGATCGTGTCCACCGCATTGGACAGAAGGAAAATGTCAAGATAGTGAGGTTAATTGTTCGAAACAGTATAGAAGAGAGGGTACTGAAGTTGCAGGAGAAAAAGAAGGAGATTGCTAGAGATGCATTCGGAAGGAGATCAGCGAAGACTCGAAGGGAGGTGAGCGTAGATGATATGCGTGCTCTGATGTCGCTGTGA 2625 0.4312 MAEDDEIYSQNEDNPSQSQPYSPSSSTDTYMVGFVIANIVGVQHYTGRINGREMVCLVREPLNPYDGNAIKVLNTRNVQVGHIEKTVAAVLSPMIDTETIFIEGIVPNTRSSDNRYKIPCQVHIFSRMELLSDVKTLILASGLQLISDSDVSFTLSAAMAVKETAGSKGRKEIKSVDHIFDMVDKDASKRRDLVALEPPKNAIKSELFVHQKEGLGWLVHRENSEELPPFWEKRDRSFVNVLTNYKTDNRPEPLRGGIFADDMGLGKTLTLLSLIAFDKYGCPIPCPIDNTRGDELDEEFSVSGGKKGKRGRPKKNTGSQKKSKTEGSKLSTVAYGKSVDGVDKSFTDMEVQTTLVVCPPSVFSTWVKQLEQHTVPGTLKMYMYYGDRRTDDAEELKKYDIVLTTYTILATENAWPNSPMKMLEWRRVILDEAHIIKNANAQQSQAVCNLKAKRRWVVTGTPIQNGSFDLFSLIAFLHFEPFSVKSYWKALVQRPLTQGMQQGLKRLQVLMATISLRRTKDKGLIELPPKTVETHFVDLSKNERELYDKIEGQAKNILRGYIEGKDFLRNYSTILSIILRLRQICTDMALCPSDLGSLFSSSNIEDVSNNPELLKKLVEVLQDGEDIDCPICISSPSDIVITCCAHIFCRACILKTLQRSRACCPLCRRPLSESDLFSAPPESSETNDDAPSSSEIGTSSKVSALMQLLLASKDQNTSTKSVVFSQFQKMLVILEGPLKAAGFKVLRIDGMMNAKKRAQVIEEFSDSTEGSPMVLLASLKTSSAGINLTAASRVFLFEPWWNPAVEEQAMDRVHRIGQKENVKIVRLIVRNSIEERVLKLQEKKKEIARDAFGRRSAKTRREVSVDDMRALMSL* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01352 874 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 480 IPR014001 -
Pte18g01352 874 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 168 872 - -
Pte18g01352 874 Pfam Helicase conserved C-terminal domain 701 817 IPR001650 -
Pte18g01352 874 Pfam SNF2-related domain 210 588 IPR000330 GO:0005524|GO:0140658
Pte18g01352 874 ProSiteProfiles Zinc finger RING-type profile. 629 668 IPR001841 -
Pte18g01352 874 SMART helicmild6 732 817 IPR001650 -
Pte18g01352 874 SMART HIRAN_2 32 126 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte18g01352 874 Pfam HIRAN domain 33 122 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pte18g01352 874 MobiDBLite consensus disorder prediction 293 329 - -
Pte18g01352 874 Pfam Zinc finger, C3HC4 type (RING finger) 628 672 - -
Pte18g01352 874 SUPERFAMILY RING/U-box 613 674 - -
Pte18g01352 874 CDD RING-HC_HLTF 624 676 - -
Pte18g01352 874 MobiDBLite consensus disorder prediction 11 25 - -
Pte18g01352 874 Coils Coil 830 850 - -
Pte18g01352 874 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 864 IPR001650 -
Pte18g01352 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 872 IPR027417 -
Pte18g01352 874 Gene3D - 528 874 IPR027417 -
Pte18g01352 874 SMART ring_2 629 667 IPR001841 -
Pte18g01352 874 SMART ultradead3 203 487 IPR014001 -
Pte18g01352 874 Gene3D - 175 283 IPR038718 -
Pte18g01352 874 CDD SF2_C_SNF 699 828 - -
Pte18g01352 874 Gene3D - 330 519 IPR038718 -
Pte18g01352 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 694 IPR013083 -
Pte18g01352 874 ProSitePatterns Zinc finger RING-type signature. 644 653 IPR017907 -
Pte18g01352 874 MobiDBLite consensus disorder prediction 677 697 - -
Pte18g01352 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 518 IPR027417 -
Pte18g01352 874 Gene3D - 24 145 - -
Pte18g01352 874 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01352 Pte-Chr18 25395727 25401532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01352 1 875 RAD5 or RAD16-like Gene Family AT5G05130 61.635 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte18g01352 SNF2_N 3.4e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01352 K15711 - jre:108979720 1161.36