Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01338 ATGGGGTTTAGTCCATTGATTTTTGGTGGTCAGATTCCTTTTAGATTGGCTGGAAATAGTGCATTGGAAACTCTTTTTCGTGGCTCTCCTGGAATTGGTGTAAGACGGGGCAGTACAGGTGTTTTTTTCATAGGTCCTGGTCTGGAAGAACTGTTTGAGCAGCTTTCTGCTAATGATCAACGAGGTCCTCCTCCAGCTTCTAATTCACATTGTCCAGTTTGCCAAGACAAATTTGATTTGGGATCTGAAGCGACACAAATGCCGTGCAACCATATATGTCACTCAGAGTGCATTGTTCTCTGGCTCGTGCAACACAACTCCTGTCCTGTATGCCGTCGGGAATTGCCATCACAAGGTCTGAGCAGTATTTGGGGTTCTGATGGACGTTCTACTAGTGTAAGGAGAGACAAGGAAGGCGAAATCTATTCTCCTACCTGTGGCCATTCCTCTCATCTAGTTCTGGGAGTAACCATGATGAAGCAGCTGGAAGCAGCTCACCTACTGTCCGTCGCAACAGTAATGAAAGAGAGTATTCTGGTTGGCCTTATGATGATTACTGAGGCCAGTTTCGTGGAGTTTTCTGTATTATTTCCTTGA 597 0.4539 MGFSPLIFGGQIPFRLAGNSALETLFRGSPGIGVRRGSTGVFFIGPGLEELFEQLSANDQRGPPPASNSHCPVCQDKFDLGSEATQMPCNHICHSECIVLWLVQHNSCPVCRRELPSQGLSSIWGSDGRSTSVRRDKEGEIYSPTCGHSSHLVLGVTMMKQLEAAHLLSVATVMKESILVGLMMITEASFVEFSVLFP* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01338 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 123 IPR013083 -
Pte18g01338 198 SUPERFAMILY RING/U-box 65 118 - -
Pte18g01338 198 ProSiteProfiles Zinc finger RING-type profile. 71 112 IPR001841 -
Pte18g01338 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 65 116 - -
Pte18g01338 198 Pfam Ring finger domain 70 112 IPR001841 -
Pte18g01338 198 SMART ring_2 71 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01338 Pte-Chr18 25259503 25260157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01338 37 118 C3H Transcription Factor Family AT5G01980 40.777 4.29e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01338 K11982 - qsa:O6P43_006301 202.986