Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01319 ATGAGATCAAAACGAAAACAGCAATCGAAGTCGAGTCAACCCGGAAAGAAACAACAGCGAGAACAAGAAGAACCCCAACAGCAAAAAGTTCAACATCCTGAGTACGAAGAGGTCGAGGAAGAATTTGAAGAGATAGAATTCGAGGAGGAAGAAGAAGAAGAGAATAATGGTAATGATGATGAATATGGGGAGGATGAAGATGACGATTCTCAGGGAATCCCTAATTCTGATGGACGGACGGTGAAGTCAGCTGCTACAGATCTAAACGATAACGAAGACGACGAACCCATATCGAAGCTTCTTGAGCCTTTTGGTAAGGATCAACTAGTGAGTTTGTTGTGTGAAGTAGCGGGTAACCACCGTCAGGTGACGGATCGGATTCGGAGTATGGCTGACGAAGACCCGGTTCACCGGAAGATATTTGTGCATGGTCTTGGATGGGACACGAACGCAGAAACCCTAATTGATGTCTTTAAGCAGTATGGTGAGATCGAGGATTGTAAGGCGGTGAGTGATAAGGTATCTGGGAAGTCTAAAGGTTACGCCTTTATTCTGTTCAAGACGAGAAGGGGAGCTCGTAATGCTTTGAAGCAGCCTCAGAAGAAAATTGGGCACCGGATGACAGCTTGTCAGTTGGCTTCGCTTGGTCCAGTCCAGACACCACATAAATCGTCGATGCCATTGGCCGATACTGCTACCGGTACTGGTACGGCACATAGCCGGTCGGCATCCGAGTACACTCAAAGGAAGATATATGTTAGCAATGTTGGGGCGGATTTGGATCCAGAAAAGTTAAGGAGTCTATTTTCAATGTTTGGAGAGATCGAGGAAGGGCCACTGGGGCTCGATAAGGTGACTGGGAAACCTAAAGGGTTTTGTTTGTTTGTATACAAGACTGTAGAAAGTGCTAAGAAAGCCTTGGAAGAGCCACATAAGAATTTCGAAGGTTATATTTTGCATTGTCAGAAAGCTATTGATGGTCCAAAACAAGGGAAGCCTCAGTTTCAGCAAAATAACTCTCAGTTCCCAAGAATTCAGAATGTAGGGTTTGGAGGGGGAGGAATCGCTACTACTGCTGGATCAGGGCAATTGATGCCTGCAGCAGCGTCTGGGATTGGGTTTAACCATGGGGTTGCAGCTGCGCAAACTTTCCAGAATCCAGCTCTCCAACAAGCATTAACTACACTGCTTGCTACGCAAGGCGCGGGGTTGGGGCTGAATAATTTGTTGGGAGCTATTGGATCAGCTGCTTCTGTGAATCCAGGTCTTCCTAGTGCTGCACATGTAGTGCAGCCCAATTATGGTGCCCAAGCGACAGGAGTAATGGGTGGCTATGCAGCTCAGAGTGGAATACCGGGAGGATATCCTAACCAACAGATGGGTCAAAGTGTGACAGGGAAAGGTCTGTATAACGCTGGACAATATGCTCCTTACACCGGGCGATAG 1446 0.4703 MRSKRKQQSKSSQPGKKQQREQEEPQQQKVQHPEYEEVEEEFEEIEFEEEEEEENNGNDDEYGEDEDDDSQGIPNSDGRTVKSAATDLNDNEDDEPISKLLEPFGKDQLVSLLCEVAGNHRQVTDRIRSMADEDPVHRKIFVHGLGWDTNAETLIDVFKQYGEIEDCKAVSDKVSGKSKGYAFILFKTRRGARNALKQPQKKIGHRMTACQLASLGPVQTPHKSSMPLADTATGTGTAHSRSASEYTQRKIYVSNVGADLDPEKLRSLFSMFGEIEEGPLGLDKVTGKPKGFCLFVYKTVESAKKALEEPHKNFEGYILHCQKAIDGPKQGKPQFQQNNSQFPRIQNVGFGGGGIATTAGSGQLMPAAASGIGFNHGVAAAQTFQNPALQQALTTLLATQGAGLGLNNLLGAIGSAASVNPGLPSAAHVVQPNYGAQATGVMGGYAAQSGIPGGYPNQQMGQSVTGKGLYNAGQYAPYTGR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01319 481 SUPERFAMILY RNA-binding domain, RBD 128 221 IPR035979 GO:0003676
Pte18g01319 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 198 IPR000504 GO:0003723
Pte18g01319 481 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 16 329 - -
Pte18g01319 481 MobiDBLite consensus disorder prediction 1 96 - -
Pte18g01319 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 202 IPR000504 GO:0003723
Pte18g01319 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 317 IPR000504 GO:0003723
Pte18g01319 481 MobiDBLite consensus disorder prediction 16 36 - -
Pte18g01319 481 Gene3D - 125 216 IPR012677 -
Pte18g01319 481 MobiDBLite consensus disorder prediction 219 242 - -
Pte18g01319 481 SMART rrm1_1 250 322 IPR000504 GO:0003723
Pte18g01319 481 SMART rrm1_1 139 211 IPR000504 GO:0003723
Pte18g01319 481 Gene3D - 229 342 IPR012677 -
Pte18g01319 481 Coils Coil 35 55 - -
Pte18g01319 481 MobiDBLite consensus disorder prediction 37 71 - -
Pte18g01319 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 333 IPR000504 GO:0003723
Pte18g01319 481 SUPERFAMILY RNA-binding domain, RBD 243 353 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01319 Pte-Chr18 25141571 25143136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01319 248 334 C2H2 Transcription Factor Family AT2G19380 39.773 1.33e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01319 K12741 - cpap:110817215 476.092