Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01310 ATGGGGAGGCCTCCTTGCTGCGACAAAGTTGGCATCAAGAAGGGTCCGTGGACTCCTGAGGAGGACATCATCCTTGTAACTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACCAACACCGGCTTGTTGAGGTGCAGCAAAAGTTGCAGGCTGAGATGGACTAACTACCTTAGACCAGGAATCAAGAGAGGGAATTTCACTCCCCATGAAGAAGGGATGATAATTCACTTGCAAGCTCTGCTGGGGAACAAATGGGCAGCCATAGCTTCCTATCTTCCTCAAAGAACAGATAATGATATAAAGAACTATTGGAACACCCATCTAAAGAAGAAGCTGAAGAAATTTCAATCAGGTTTGAACCCTGATCACATGGCAAATGATCACTCAAACGCAACAACTCATGATCAGTTTGTTTCCAAGAGCTTCAATGGTGAGAGAAGGAGCTCAGATGTCTTCAACAATGCTTCATCCCTTACCCTTAGTCAATCTTCAACATATGCTTCAAGCACTGAAAACATTTCGCGACTTTTAGAAGGTTGGATGAGATATTCCCCAAAAAGTACTCAAGAGAAAGTGAATCCCAGCAGCAGCAGCAGCAGAAACCACGTTGTTGTACATAACATCCCTCATCATGGGGATTCCTACCAAACAAAAACTAAACAAGAAGGCTGTGATATGGTTTCTCACGAGGAGCTTGGTTCGATTTTATCGTTTGATCAGAATCTGAACAACGCTGCATGGGACAAGTCGACCTGTGATTCTGTAAGGGCAGGTTCTGAAGTTGCTGATGAGGACATAGATACGGATGAGAGGGAATTACAGGCAGTACTAGATAAGAAGAAACAAAGTTCTGAAGACAGTAGTACTGCAACTCCTCCCTTGTCATTCATTGAGAAATGGCTGTTGGATGAAAGTGTGGGACACGTAGAGGACATGATGGAGCTGTCTGCTATGTTCTAA 972 0.4403 MGRPPCCDKVGIKKGPWTPEEDIILVTYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSGLNPDHMANDHSNATTHDQFVSKSFNGERRSSDVFNNASSLTLSQSSTYASSTENISRLLEGWMRYSPKSTQEKVNPSSSSSRNHVVVHNIPHHGDSYQTKTKQEGCDMVSHEELGSILSFDQNLNNAAWDKSTCDSVRAGSEVADEDIDTDERELQAVLDKKKQSSEDSSTATPPLSFIEKWLLDESVGHVEDMMELSAMF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01310 323 CDD SANT 69 112 IPR001005 -
Pte18g01310 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte18g01310 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g01310 323 CDD SANT 16 61 IPR001005 -
Pte18g01310 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g01310 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte18g01310 323 Gene3D - 13 66 - -
Pte18g01310 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g01310 323 Gene3D - 68 140 - -
Pte18g01310 323 SMART sant 13 63 IPR001005 -
Pte18g01310 323 SMART sant 66 114 IPR001005 -
Pte18g01310 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g01310 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Pte18g01310 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte18g01310 323 FunFam Transcription factor MYB60 68 140 - -
Pte18g01310 323 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01310 Pte-Chr18 25070988 25072828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01310 1 138 MYB Transcription Factor Family AT5G62470 78.986 8.11e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01310 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01310 K09422 - tcc:18599767 421.009