Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01307 ATGAACTCACAACAACTTCAGAATGCCAGTGATGGGTTTCATGGGCGTCAAGATACGAGCTTTCTTCCTCCATATATACATTCCTTTCGTTGTCTTCAAGGCAACCAACTCCCGGCATCTTCCTCCTATGGGGTTATGGTTCATTATGAGGGGAGAGAGTCTACCAAAGCCAAAACTGGCTTTGAGAGTTTAGGCCAGCTATTAGATAGGGAGAACAGGAGAGTTGAAAGAAGTACAAGTAAGGGTAGTGGCTTCTCAGGGGTGGAGGGAAAAGACTTCATTTTTAAACTTGACGAGGAAGTGGAATTCAAGAGCTCTGCAGCTCAGAAAAAATCTCACACTAAGCTCTGTGCCAGAGGCCATTGGAGGCCAGCTGAAGATGCAAAACTCAAAGAGCTTGTGGCTCAGTTTGGCCCTCAAAACTGGAACACGATCTCTGAGCATCTCGAAGGAAGATCAGGCAAAAGTTGCAGATTGAGATGGTTTAATCAACTAGATCCTCGGATTAACAAAAGAGCTTTTTCTGAAGAAGAGGAAGAAAGGCTCTTATCTGCTCATAGACTATATGGTAACAAATGGGCAATGATTTCTAGGCTCTTCCCTGGCAGAACTGACAACGCTGTTAAGAACCATTGGCACGTGATTATGGCCAGGAAACACAGAGAGCATTCCTGTACTTACAGGAGGAGAAAACCCAATCCCACTGAGTTCCTTTCAAAGGAATTAAATTTGACTTTATCGAACAATGCAGCTTCTGAACCCACCATTTCTAGTAACCAGGATGAATCTGCCTCCACGTGCACTGATCTCTCGCTTAGTCCATCTGTAGCCAAAGGAAGTCATAATTTTTTGCAAGGTTCTGGCTCATCTCAATGTTTCCCAAATCATGGATCATCTATGGTGAAGAGAGTTTGTGATTCTGATTTTGACAAGTTTCATGGCACCTGGCGCAGTAGCTGCCTTGACCCTGGCACCAAGGGGAAGCTCATATTTGGGGACCAATCTGGTTTTTCAGATTCAAACTCTTCAGATGTCTCTGTTTCTGAGTCAGTTGCCACCAACAGGACCAATCTCTCGATATCTGCAGGAAAAAAACAAGGGAACGAGGTCATTCACGTGGGTTTCATTGATTTTCTTGGGGTAGGAGCAACATAA 1155 0.4433 MNSQQLQNASDGFHGRQDTSFLPPYIHSFRCLQGNQLPASSSYGVMVHYEGRESTKAKTGFESLGQLLDRENRRVERSTSKGSGFSGVEGKDFIFKLDEEVEFKSSAAQKKSHTKLCARGHWRPAEDAKLKELVAQFGPQNWNTISEHLEGRSGKSCRLRWFNQLDPRINKRAFSEEEEERLLSAHRLYGNKWAMISRLFPGRTDNAVKNHWHVIMARKHREHSCTYRRRKPNPTEFLSKELNLTLSNNAASEPTISSNQDESASTCTDLSLSPSVAKGSHNFLQGSGSSQCFPNHGSSMVKRVCDSDFDKFHGTWRSSCLDPGTKGKLIFGDQSGFSDSNSSDVSVSESVATNRTNLSISAGKKQGNEVIHVGFIDFLGVGAT* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01307 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 165 IPR017930 -
Pte18g01307 384 SMART sant 170 218 IPR001005 -
Pte18g01307 384 SMART sant 118 167 IPR001005 -
Pte18g01307 384 CDD SANT 182 213 IPR001005 -
Pte18g01307 384 MobiDBLite consensus disorder prediction 251 271 - -
Pte18g01307 384 FunFam MYB transcription factor 119 170 - -
Pte18g01307 384 ProSiteProfiles Myb-like domain profile. 166 216 IPR001005 -
Pte18g01307 384 FunFam MYB transcription factor 172 242 - -
Pte18g01307 384 SUPERFAMILY Homeodomain-like 119 212 IPR009057 -
Pte18g01307 384 Gene3D - 172 236 - -
Pte18g01307 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 220 IPR017930 -
Pte18g01307 384 ProSiteProfiles Myb-like domain profile. 119 165 IPR001005 -
Pte18g01307 384 PANTHER MYB PROTEIN-RELATED 119 259 - -
Pte18g01307 384 Pfam Myb-like DNA-binding domain 122 182 - -
Pte18g01307 384 Gene3D - 119 170 - -
Pte18g01307 384 CDD SANT 122 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01307 Pte-Chr18 25054302 25055880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01307 113 274 MYB Transcription Factor Family AT5G17800 66.864 2.12e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01307 Myb_DNA-bind_6 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01307 K09422 - qsa:O6P43_006237 374.785