Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte18g01293 | ATGGACAGACTCATAAGTTTAGAACCATCCAACTCCGTTCCAATTCGAATTGAACTAGGTCGGAAATGTACTGGTGAGCTTACCTTGAGAAATGTCATGTACACTATGCCAGTGGCCTTTAGGCTTCAACCAATGATGAAGACAGGTTATACAGTCAAGCCACAATCTGGGGTTATATCACCACTTGCAACTGTGACAATCGAGATCATCTACCACCTCCCTCCCGGATCATATATACCTCACTCTTTTCCTTACTGTGACGACTCATTTCTGTTACATAGTGTGGTGGTTCCTGGAGCAGGTATTAAGGAACCATCTTCTATGTTTGATGCTGTTCCGAATGACTGGTTCACAACCAAGAAAAAACAAGTGTTCATAGACAGTGGTATCAGAATTATGTTTGTGGGTTCAAAGATTTTGTGTGAATTGTTGGCAAATGGTTCCATGGATGATATCAGAGAAGTACTTGAACGTAGTGATCCAGCATGGAAGGCAGCGGATTCTGTGGACTCACAAGGCCAGACACTGCTGCACTTGGCCATTGCACAAAGCAGACCAGACCTAGTCCAATTGCTGCTTGAGTTCGATCCTGATATAGAGGCTCCAAGCCGATCTGGGTCGACGCCGCTTGAAGCTGCTTGCTTATCAGGCGAAGACTTGATCGTCGAGCTTCTATTGGCTCACAAAGCCAACACAGAAAGATCGGAATCTTCCAATTGGGGACCAATTCACCTTGCAGTCAAAGCGGGGCACTTGGAGGTTCTGAGGCTTCTATTGCTCAAAGGGGCTAACGTGAATTCCCTAACAAAAGATGGCAACACAGCGTTACACCTTGCAGTTGCGGAGCGCAGACGCGATTGCAGTCGACTTCTATTGTCCAACTGCGCAAACTCAAATGTCCGCAACACGAGAGATGGTGACACGGCTTTGCACATGGCTGCTGGCCTAGGAGATGAGCACCTGGTGAAGCTGTTGTTACAGAAGGGAGCTAACAAGGACGTGAGGAACAAATCTGGAAAAACTGCCTATGACATTGCAGCTGAAAATGGACATACCCGACTCTTTGATGCACTTAAACTTGGGGATGGTCTTTGTACTGCTGCAAGAATGGGTGATGTGAAAGCTATCCAGAGACTGCTGGATAATGGCGCAGCAATAAATGGGCGAGACCAGCATGGCTGGACGTCACTGCACAGAGCTTCATTCAAAGGGAAGATGGAAGCAGTGAGGATTCTGCTTGACAAGGGGATTGATATGGATGCCATGGATGAAGATGGATACACTGCGTTGCATTGCGCAGTGGAGTCAGGGCATACAGATGTTACAGAGTTGTTAGTAAAGAAAGGAGCCGATGTCGAAGCAAGAACTAACAAAGGTGTGAGTGCTTTGCAGATAGCAGAGTCACTGCAGTATGTGGGGATCACAAGGATTCTCATCCACGGCGGTGCTACTAAAGAGAGTTCTGTAGCACAGGTTTCTACACCTGCTATGTTTTCACTTGGGAACAAGACCGAAATGGGTGGACTGAAAAAGAAAGGAAGCACCTTGAGGAGTAGGAGTAACTTTGATCCGTCAATGGCGCCACTGGCTGTGCTCTAA | 1599 | 0.4703 | MDRLISLEPSNSVPIRIELGRKCTGELTLRNVMYTMPVAFRLQPMMKTGYTVKPQSGVISPLATVTIEIIYHLPPGSYIPHSFPYCDDSFLLHSVVVPGAGIKEPSSMFDAVPNDWFTTKKKQVFIDSGIRIMFVGSKILCELLANGSMDDIREVLERSDPAWKAADSVDSQGQTLLHLAIAQSRPDLVQLLLEFDPDIEAPSRSGSTPLEAACLSGEDLIVELLLAHKANTERSESSNWGPIHLAVKAGHLEVLRLLLLKGANVNSLTKDGNTALHLAVAERRRDCSRLLLSNCANSNVRNTRDGDTALHMAAGLGDEHLVKLLLQKGANKDVRNKSGKTAYDIAAENGHTRLFDALKLGDGLCTAARMGDVKAIQRLLDNGAAINGRDQHGWTSLHRASFKGKMEAVRILLDKGIDMDAMDEDGYTALHCAVESGHTDVTELLVKKGADVEARTNKGVSALQIAESLQYVGITRILIHGGATKESSVAQVSTPAMFSLGNKTEMGGLKKKGSTLRSRSNFDPSMAPLAVL* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte18g01293 | 532 | SUPERFAMILY | Ankyrin repeat | 167 | 495 | IPR036770 | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 205 | 237 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 305 | 337 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 305 | 337 | - | - | |
| Pte18g01293 | 532 | Gene3D | - | 237 | 309 | IPR036770 | - | |
| Pte18g01293 | 532 | Gene3D | - | 360 | 429 | IPR036770 | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 135 | IPR000535 | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 238 | 270 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 392 | 424 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 205 | 231 | - | - | |
| Pte18g01293 | 532 | PRINTS | Ankyrin repeat signature | 306 | 321 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | PRINTS | Ankyrin repeat signature | 441 | 455 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | Pfam | Ankyrin repeats (3 copies) | 365 | 455 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | Pfam | Ankyrin repeats (3 copies) | 146 | 232 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 271 | 303 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 425 | 457 | - | - | |
| Pte18g01293 | 532 | Gene3D | - | 132 | 236 | IPR036770 | - | |
| Pte18g01293 | 532 | PANTHER | ANKYRIN REPEAT CONTAINING | 241 | 358 | - | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 238 | 266 | - | - | |
| Pte18g01293 | 532 | Pfam | MSP (Major sperm protein) domain | 5 | 109 | IPR000535 | - | |
| Pte18g01293 | 532 | SUPERFAMILY | PapD-like | 2 | 149 | IPR008962 | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 392 | 424 | - | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 172 | 201 | - | - | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat region circular profile. | 271 | 302 | - | - | |
| Pte18g01293 | 532 | Pfam | Ankyrin repeats (many copies) | 240 | 292 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | Pfam | Ankyrin repeats (many copies) | 307 | 357 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 172 | 204 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | Gene3D | Immunoglobulins | 1 | 131 | IPR013783 | - | |
| Pte18g01293 | 532 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 349 | 388 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 305 | 334 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 458 | 487 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 425 | 454 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 205 | 234 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 238 | 267 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | SMART | ANK_2a | 392 | 421 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | ProSiteProfiles | Ankyrin repeat profile. | 425 | 457 | IPR002110 | GO:0005515 | |
| Pte18g01293 | 532 | Gene3D | - | 310 | 359 | IPR036770 | - | |
| Pte18g01293 | 532 | Gene3D | - | 430 | 480 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte18g01293 | Pte-Chr18 | 24943364 | 24945160 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte18g01293 | 291 | 526 | Ion Channels | AT4G32500 | 30.242 | 3.25e-20 | 92.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte18g01293 | - | - | qsa:O6P43_006204 | 813.527 |