Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01283 ATGGGGGTTCCTGTCACAATGAACGATCTTTTAACGGAATCATTTGAGATCCCTCGCCGTCAAGGCGCCGGAGATGGAGACATCGAGTCTGGAGCATATGCTATGACCTCAGGGGAACTAGGAATGGAGAACTTCTTTAAAAAGATACAGGAAATTGACAAACAATATGACAAGCTGGAAAAGTTATTGAGGAAACTCCAGAAAGCTCATGAGGAATCCAAGGCTGTAACAAAGGCTCCAGCAATGAAGTCCATCAAGCAACGAATGGAAAAAGATGTTGACGAAGTAAAGAAAATTGCACTTTTCATAAAGTCAAAAATTGAGGAACTTGACAGAGAAAATTTGGCAAATAGGCAGAAGCCTGGTTGTGGAAAAGGGACTGCTGTAGACCGCTCAAGAATGGCTACAACTACATCTTTGAAAAAGAAATTGAAGGACAAGATGGCAGAATTCCAGACGCTGAGAGAAAATATTCATCAAGAATACCGTGAGGTGGTTGAGAGACGTGTCTTTACAGTTACGGGTGCAAAAGCTGATGAGGAGACAATTGACAGATTGATTGAGACGGGAGACAGTGAACAGATTTTCCAAAAGGCTATTCAAGAACAAGGGCGAGGCCAGATAGTGGAAACCCTGGCAGAAATTCAGGAACGCCATGATGCTGTTAGAGACTTAGAGAGAAAGCTTCTTGATTTACAGCAGATATATCTGGATATGGCAGTACTGGTTGATGCGCAAGGGGAGATACTCGAGAATATAGAGTCACAGGTGTCAGGTGCAGTAGACCATGTACAACAAGGAAACACCGCCCTACAGAGGGCCAAGTCATTGCAGAAAAATTCCAGAAAATGGATGTGTATTGCAATTATCATACTCCTTATCATTGTCGCCATTATCGTGGTGGCCGTCATCAAGCCATGGGTTAGCAAAAATGGGTCTTAG 942 0.4321 MGVPVTMNDLLTESFEIPRRQGAGDGDIESGAYAMTSGELGMENFFKKIQEIDKQYDKLEKLLRKLQKAHEESKAVTKAPAMKSIKQRMEKDVDEVKKIALFIKSKIEELDRENLANRQKPGCGKGTAVDRSRMATTTSLKKKLKDKMAEFQTLRENIHQEYREVVERRVFTVTGAKADEETIDRLIETGDSEQIFQKAIQEQGRGQIVETLAEIQERHDAVRDLERKLLDLQQIYLDMAVLVDAQGEILENIESQVSGAVDHVQQGNTALQRAKSLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWVSKNGS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01283 313 CDD SNARE_syntaxin1-like 211 273 - -
Pte18g01283 313 SUPERFAMILY t-snare proteins 41 267 IPR010989 GO:0016020|GO:0016192
Pte18g01283 313 Coils Coil 141 161 - -
Pte18g01283 313 FunFam Syntaxin 132 205 305 - -
Pte18g01283 313 PANTHER SYNTAXIN 41 293 IPR045242 -
Pte18g01283 313 Gene3D - 39 166 - -
Pte18g01283 313 SMART tSNARE_6 207 274 IPR000727 -
Pte18g01283 313 Gene3D - 205 306 - -
Pte18g01283 313 Pfam SNARE domain 248 300 IPR000727 -
Pte18g01283 313 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Pte18g01283 313 CDD SynN 42 199 IPR006011 GO:0016020
Pte18g01283 313 FunFam Syntaxin 132 37 166 - -
Pte18g01283 313 Coils Coil 42 79 - -
Pte18g01283 313 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Pte18g01283 313 SMART SynN_4 37 163 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01283 Pte-Chr18 24879564 24884525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01283 7 314 SNARE and Associated Proteins AT3G03800 73.701 2.23e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01283 K08486 - gmx:100306329 473.781