Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01281 ATGGAAATTCAGTTCCAGCAATCCAAGCATCATAAGAGAATCATTCCAACTGGCAAAACTGGTGGGAAATTCAAAGGAAAAAGTAAAAGCAGCAGTGGAAACAAGTTTGTGGGTGTGAGACAACGACCTTCAGGCAGATGGGTAGCTGAGATTAAGGATACGAGTCATACAACTCAGAAAATAAGGATGTGGCTTGGAACATTTGAGACAGCAGAGGAGGCAGCTAGAGCTTATGATGAAGCTGCCTGCCTTCTTCGTGGAGCGAATACTCGGACCAACTTCATAACTCAAGTCTCATTGGATTCACCTCTTGCTTCAAGAATACGTAATCTCCTCAACAGCAGAAAGGGAATCAAACATGATGAAGATGATGGCCATGTTTCCTTCCCGAAAGCTAGTAACTCTACTACTTGTACTGACAACAGTAATAGCACCAGTAGTAGTAGTAGTTGCAGCAATGAGAACTTTAATTGTAATGAGATTACCAGAGAAATACAGCTGTTTGATGATGCATATAGGCCAGATTTGAGCAACTGCGGTGAAGAATTAGAGTCTGGTACTGCTTTCAAGTCCAATATTTCGTGGGGTTTTAATGATGTGTTGGATCTCCCAAAAAATGTAGACTTGCCCAATGCAGCTGAACGGATGGAGTTCACTGAATTTGAAAGGATGAAAGTTGAAAGGCAAATTTCAGCATCGCTGTATTCTCACCTAATTCTGATCGTAGAGTATTTCGTTTGA 741 0.4143 MEIQFQQSKHHKRIIPTGKTGGKFKGKSKSSSGNKFVGVRQRPSGRWVAEIKDTSHTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITQVSLDSPLASRIRNLLNSRKGIKHDEDDGHVSFPKASNSTTCTDNSNSTSSSSSCSNENFNCNEITREIQLFDDAYRPDLSNCGEELESGTAFKSNISWGFNDVLDLPKNVDLPNAAERMEFTEFERMKVERQISASLYSHLILIVEYFV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01281 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 230 - -
Pte18g01281 246 Gene3D AP2/ERF domain 34 97 IPR036955 GO:0003700|GO:0006355
Pte18g01281 246 ProSiteProfiles AP2/ERF domain profile. 35 95 IPR001471 GO:0003700|GO:0006355
Pte18g01281 246 SMART rav1_2 35 101 IPR001471 GO:0003700|GO:0006355
Pte18g01281 246 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Pte18g01281 246 MobiDBLite consensus disorder prediction 119 151 - -
Pte18g01281 246 MobiDBLite consensus disorder prediction 129 151 - -
Pte18g01281 246 FunFam ethylene-responsive transcription factor RAP2-11 34 96 - -
Pte18g01281 246 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Pte18g01281 246 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Pte18g01281 246 MobiDBLite consensus disorder prediction 1 38 - -
Pte18g01281 246 SUPERFAMILY DNA-binding domain 35 95 IPR016177 GO:0003677
Pte18g01281 246 Pfam AP2 domain 35 87 IPR001471 GO:0003700|GO:0006355
Pte18g01281 246 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01281 Pte-Chr18 24845762 24847520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01281 19 236 AP2-EREBP Transcription Factor Family AT5G19790 44.934 5.91e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte18g01281 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01281 K09286 - qsa:O6P43_009860 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01281 18 24845762 24847520 Pte18g01281 18 24845762 24847520 RCT