Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01272 ATGCCAGAATTGAGAAGTGGAGCCCGGAGGTCGAAACGGCTTGGTGAGCTTCAGTCTTCCCCATTACCAGTTGATCAAACAGAGAATTGTGTCCAACCCACTCAAAACAGAAACAGGAGGAGAGTAGGTGGAAGAGGAAGAGGTGCTAAGGCCACAGCTTTAGCTAAAGCTTCTCCTGCAGTACCTTCTAGGCCAACTGCAGCTGGCCGGGGCCGAGGAATCAGGTTGATAGATTTAGACCCTGAGCCTTGTGAGGTCCTTCCTGAACCTGTTGCTTTAGGTGTTCCAGAGCCCCTTTACAATCACATTGAAGTAGTTGCAAACAAAGGTGTTGCGATGGAGGGTGGAAGTGCAGACAAGGTGGCGGGAGCAGAAGAGGAAGCGGCCACGACACCTGTTCCTGAGAGGGTACAAGTTGGAAATTCCCCTATGTATAAGATAGAAAGGAAATTGGGTAAGGGAGGTTTTGGTCAAGTCTATGTCGGGAGAAGGGTCAGTGGTGGCTCTGATCGGACTGGTCCCGATGCAATTGAGGTTGCTCTGAAGTTTGAACATAGAAACAGTAAAGGTTGTAGTTATGGCCCTCCATACGAGTGGCAAGTCTACAATACTCTAAATGGATGCTATGGAATTCCATGGGCTCATTACAAGGGGCGGCAAGGAGATTTCTACATTCTGGTCATGGACATGCTTGGTCCCAGTCTTTGGGATGTTTGGAATTCTCTTGGCCAATCGATGTCTCCAAGTATGGTTGCTTGTATTGCAGTGGAGGCGATATCAATTCTCGAGAAGCTCCACCTGAAAGGGTTTGTGCATGGTGATGTAAAGCCAGAAAATTTTTTGCTTGGTCAACCTGGAACAGCTGATGAGAAGAAGCTATATCTTATCGATCTTGGTTTGGCATCTAGATGGAAAGATGCATCATCTGGTCTACATGTTGATTATGATCAAAGGCCTGATATATTCAGAGGAACAATTAGGTATGCAAGTGTGCATGCACATTTAGGTCGCACTGGGAGTCGTAGAGATGATCTTGAGTCATTAGCGTACACATTAATATTTCTGATTAGAGGAAGGTTGCCATGGCAGGGTTATCAGGGTGACAATAAGAGTTTTCTTGTATGTAAGAAAAAGATGGCTACATCACCTGAGTTGATGTGCTGCTTCTGTCCTGCCCCATTCAAGCAATTCCTCGAGGCTGTGACGAACATGAAATTTGATGAGGAGCCAAATTATCCGAAGCTGATATCATTTTTTGATACGCTGATTGAACCTATTGGTCCATTACGTCCAATTAGAATTGATGGTGCATTAAAGGTTGGGCAAAAGCGAGGAAGATTGCTTATTAATCTAGAAGATGATGAGCAACCAAAGAAGAAAGTGCGTCTAGGAAGTCCTGCGACCCAGTGGATATCAGTTTATAATGCTCGCCGTCCCATGAAGCAAAGATACCACTACAATGTTGCTGACACTAGGCTGCGGCAACATGTGGAAAAGGGTAATGAAGATGGGTTGTACATCAGCTGTGTGGCCTCTGCATCAAATCTCTGGGCCTTAATCATGGATGCTGGAACTGGTTTTACTTCCCAGGTTTATGAATTGTCAGCAATATTCTTGCATAAGGACTGGATCATGGAGCAGTGGGAGAAAAATTACTACATCAGTTCAATAGGGGGTGCAGCTAATGGGAGTTCCTTGGTTGTTATGTCCAAAGGGACTCAATACACTCAGCAGTCATACAAAGTGTGTGAATCTTTTCCTTTCAAGTGGATAAACAAAAAGTGGAAAGAAGGATTTCATGTTACATCGATGACCACTGCTGGCAGTCGCTGGGGTGTTGTGATGTCTCGGAATGCTGGATATTCTGATCAGGTTGTGGAGCTTGACTTCTTGTATCCAAGCGAAGGAATTCACCGAAGATGGGAGAGTGGTTATCGCATAACTGCTATGGCTGCCACTCCTGATCAAGCAGCCCTTATACTGAGTATCCCAAAAAGAAAGTTGCTTGACGAAACTCAAGAAACTTTGCGTACCTCTGCCTTTCCCAGCACTCATGTCAAGGAAAAATGGTCCAAGAATCTCTATATTGCCTCAATATGTTACGGAAGGACAGTGTGCTAG 2121 0.4517 MPELRSGARRSKRLGELQSSPLPVDQTENCVQPTQNRNRRRVGGRGRGAKATALAKASPAVPSRPTAAGRGRGIRLIDLDPEPCEVLPEPVALGVPEPLYNHIEVVANKGVAMEGGSADKVAGAEEEAATTPVPERVQVGNSPMYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCSYGPPYEWQVYNTLNGCYGIPWAHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASRWKDASSGLHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIRGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAPFKQFLEAVTNMKFDEEPNYPKLISFFDTLIEPIGPLRPIRIDGALKVGQKRGRLLINLEDDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVEKGNEDGLYISCVASASNLWALIMDAGTGFTSQVYELSAIFLHKDWIMEQWEKNYYISSIGGAANGSSLVVMSKGTQYTQQSYKVCESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITAMAATPDQAALILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01272 706 MobiDBLite consensus disorder prediction 1 69 - -
Pte18g01272 706 SUPERFAMILY Protein kinase-like (PK-like) 145 435 IPR011009 -
Pte18g01272 706 ProSiteProfiles Protein kinase domain profile. 145 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01272 706 ProSitePatterns Protein kinases ATP-binding region signature. 151 182 IPR017441 GO:0005524
Pte18g01272 706 PANTHER CASEIN KINASE-RELATED 138 670 - -
Pte18g01272 706 FunFam Casein kinase 1-like protein 117 465 - -
Pte18g01272 706 CDD STKc_CK1 144 419 - -
Pte18g01272 706 Gene3D Transferase(Phosphotransferase) domain 1 112 461 - -
Pte18g01272 706 SMART serkin_6 145 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01272 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Pte18g01272 706 MobiDBLite consensus disorder prediction 20 39 - -
Pte18g01272 706 Pfam Protein kinase domain 145 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01272 Pte-Chr18 24785684 24791242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01272 119 282 EF-hand Containing Proteins AT5G66210 27.168 2.68e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pte18g01272 Pkinase 2.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01272 - - gmx:100801967 1278.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01272 18 24785684 24791242 Pte18g01272 18 24785684 24791242 RCT