Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01267 ATGGAGGATGCTACAATGGGTCAGTACTGGTGCTACATGTGCTCTCGGATGGTGAATCCCATTGGAGAAGTTCAGAATAAATGCCCATTTTGTGAAACCGAGATTGTGGGAGAAGTGAGTAACCAAGAAACCCCAAGTGACAACCTGGATTCGAGATTAAACCATGCATTTTCTCAGTTTGCACCACTCTTTCTTGGTGTGATGGAAGGTTTAAATCTTCCTCCTGCACTCTTGACAACTCAAGAATTTCCAAGCAATAATACCTCTCCTGGAGAGGAAGAGACAGAACAAGAAAGGGAACAGGAAGTAGCATCTAGGAGTAGTAGGAGAAGAAACTCAGTCTCTGCGATTAGCGTTTTTCATCAGCATCCACATGTGAGGATGACTTCTGAGAGTGACGAAAATGATCATAGTGGTGGAGGTGGTAGAATAGTAGTATTTGATAACAATGGTGAGGACGTCTTTGTGTTTAGACGTTCTTTCGACTTGAATCAAACACAACATCCAAGCCAGAATTCAGTTGGCTCTTTAAGCGGCTTGCCAGTAGGACAAGGTTTCAATGTCCTACTGCAGCGTTTGATAGATAATGACCCCAACAGATATGGAACCCCTCCAACTCAAAAGGCGGCCATTAAAGCTATGCCTGGTGTGATTATTGAGGATCAATCACAATGCAGTATATGTTTGGAAGATCTTGAAATTGGTGTTGAAGCTAAGGAGATGCCATGCAAACACAAATACCACTCTGGATGCATTCTCTCGTGGCTAGAACTTCACAGTTGTTGCCCATTGTGCAGGTTTCAAATGCCTACCAATGAGTTTAAGACTGAGGCAGCCACCAGGCAAGATAATACTTTTGGAAATGTTGATGATTGGGCTATAGAATTCTCAAAATTGGTTGAAGATGATGCCTTTGCCACAATGATACAGATTTTGCATTGCAAGATACACAGTGACCCCTGGAGGAAACAACAGTACCAAGCTTGA 987 0.4286 MEDATMGQYWCYMCSRMVNPIGEVQNKCPFCETEIVGEVSNQETPSDNLDSRLNHAFSQFAPLFLGVMEGLNLPPALLTTQEFPSNNTSPGEEETEQEREQEVASRSSRRRNSVSAISVFHQHPHVRMTSESDENDHSGGGGRIVVFDNNGEDVFVFRRSFDLNQTQHPSQNSVGSLSGLPVGQGFNVLLQRLIDNDPNRYGTPPTQKAAIKAMPGVIIEDQSQCSICLEDLEIGVEAKEMPCKHKYHSGCILSWLELHSCCPLCRFQMPTNEFKTEAATRQDNTFGNVDDWAIEFSKLVEDDAFATMIQILHCKIHSDPWRKQQYQA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01267 328 Pfam Ring finger domain 224 266 IPR001841 -
Pte18g01267 328 MobiDBLite consensus disorder prediction 81 139 - -
Pte18g01267 328 SUPERFAMILY RING/U-box 215 271 - -
Pte18g01267 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 102 270 - -
Pte18g01267 328 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Pte18g01267 328 SMART ring_2 225 265 IPR001841 -
Pte18g01267 328 FunFam E3 ubiquitin-protein ligase RNF181 194 272 - -
Pte18g01267 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 272 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01267 Pte-Chr18 24752344 24755703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01267 185 272 C3H Transcription Factor Family AT1G26800 46.067 6.61e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01267 - K11982 tcc:18599911 244.588