Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01262 ATGATGAGAAATCCTCATTCCCATTCAAGCTTACCACCAGGCTTTAGGTTCCACCCCACTGATGAAGAACTCATATTTCATTATCTGAGTAAGAAGGTGGAGTCCACACCTCTTCCCGTTTCAATCATTGCAGAGGTTGATATCTACAAATTTGATCCATGGGACTTGCCAGGCAAGGCTTTGTTTGGAGAAAAAGAATGGTACTTTTTCAGTCCCAGAGACAGAAAATATCCCAATGGTGCCCGACCCAACAGGGCAGCAGCTTCTGGGTATTGGAAGGCAACAGGTACTGACAAAACCATCAAGGCCTCCTTTGCAGCAGCTGGCGTGAAAAAGGCCCTTGTATTCTACAAAGGTAGACCCCCTAAAGGTATCAAGACGAATTGGATCATGCATGAATATCGCCTCATAGACAGCAATCAACCCATCCAGCTCAAAAATTCTTCCATGAGGTTGGATAATTGGGTTCTTTGTCGGATTTACAAGAAGACCAAATATGTTTTACCATCCACACCAGAAGAAACAATGTTGGCGGCAGGGACAGACCATCAGCAATTTCATCAACAGTTTGTCCATAACGACCCTACCCTTCTTCCAGACTTTAAACCTTCCATTGGTGAAAACAAACTTGTGTCCCAGAAAACCTTTTCCTTCACAAACTTACTAGATGCTATGGACTACGCATTACTGAGCAGCTTCCTCTCCGAAGACAGCACCCACCCCACAGAATCCGGACCGACTCGTGAGTTGAATGGAAGGCACATGCAGCAGCAAGCATTCTTAGGTAACAGTCATGATAGCTACTTGCATCAGAAGCTTCCTCAATTGAACAGTGCGTCCCCCAGAAACATGGAAAACCGTCTCAAGCGCCAGAACACAGACATGGTTGATCAGGATACTTTATACCCATATAAGAAATACGTGAACTCTTGCAGTACTACTCTCTTTGACCGTTCCTACGAAACTGACATCCCTCAACGCAACATAATGAACAAGCATTCACCATGGTTCACTGATCAGAAAGACTTCACAGTGGAACATGATACAAAAAGACTCGAGAATCGATTTGGAATTGGCCGATGA 1083 0.4451 MMRNPHSHSSLPPGFRFHPTDEELIFHYLSKKVESTPLPVSIIAEVDIYKFDPWDLPGKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIKASFAAAGVKKALVFYKGRPPKGIKTNWIMHEYRLIDSNQPIQLKNSSMRLDNWVLCRIYKKTKYVLPSTPEETMLAAGTDHQQFHQQFVHNDPTLLPDFKPSIGENKLVSQKTFSFTNLLDAMDYALLSSFLSEDSTHPTESGPTRELNGRHMQQQAFLGNSHDSYLHQKLPQLNSASPRNMENRLKRQNTDMVDQDTLYPYKKYVNSCSTTLFDRSYETDIPQRNIMNKHSPWFTDQKDFTVEHDTKRLENRFGIGR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01262 360 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Pte18g01262 360 SUPERFAMILY NAC domain 6 163 IPR036093 GO:0003677|GO:0006355
Pte18g01262 360 Gene3D NAC domain 20 167 IPR036093 GO:0003677|GO:0006355
Pte18g01262 360 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Pte18g01262 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 266 - -
Pte18g01262 360 FunFam NAC transcription factor 56 20 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01262 Pte-Chr18 24700458 24702446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01262 9 347 NAC Transcription Factor Family AT3G04070 49.138 1.53e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte18g01262 NAM 6.9e-39 No_clan