Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01250 ATGAGCTTTCAAGATATCCAGAAGTCCAGGACTTACGGAGCCAAGGGCCAAATCGCTTCCCAGTCTCAGTCAAAAGCAGTGGCTACTGGCATTTTCCAGATCAACACTGCTGTCGGCACTTTCGGGCGACTAGTCGATTCTATTGGAACCGCCAAGGATACCCCAGATCACCGCCAGAAGCTCCATAACACGAGGCAGAAGATATTGCAATTGGTAAAGGATACTTCAGCCAAGCTCAAGTCTTTGACCGAAGACACTCTTGCAAACAATCCTAATAAGAAGATTGAAGATGCTAAGCTTGCCAGAGATTTCCAAACTACACTGCAAGAATTTCAGAAAGTTCAGCAACTTGCAGCTGAGCGTGAGTCTACGTTTACACCTGCTAATGCTCTTCCTTTATCTTCAAGCTCTACCTCAGGTGAGCAATTGGGGCATGACAATGACCTGGAAAGTCGACCATTTCTTGGAGAACAGAAAAGGCAGGAGATCCTTTTGTTGGACAATGAGATTTCCTTCAATGAAGCCATGATTGAGGAAAGGGATCAAGGTCTAAGGGAAGTAGAGGAGCAAATCGGTCAAGCAAATGAAATCTTCAAGGACCTAGCTGTTCTTGTTCACGACCAAGGTGTAGTTATTGATGACATTGGATCAAATATTGATTCCACTGCTGGTGCAAGTACCCAAGCTAGAGTTCTCATGTCCAAGGCTTCTAAGGGTCAGAAATCAAACACCTCATGGTGTTGGTGGGTACTCATAATATTAATAGCGGGACTTCTCATCCTTCTTCTCATTCTTATTCTTTAG 804 0.444 MSFQDIQKSRTYGAKGQIASQSQSKAVATGIFQINTAVGTFGRLVDSIGTAKDTPDHRQKLHNTRQKILQLVKDTSAKLKSLTEDTLANNPNKKIEDAKLARDFQTTLQEFQKVQQLAAERESTFTPANALPLSSSSTSGEQLGHDNDLESRPFLGEQKRQEILLLDNEISFNEAMIEERDQGLREVEEQIGQANEIFKDLAVLVHDQGVVIDDIGSNIDSTAGASTQARVLMSKASKGQKSNTSWCWWVLIILIAGLLILLLILIL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01250 267 SMART SynN_4 14 123 IPR006011 GO:0016020
Pte18g01250 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Pte18g01250 267 PANTHER SYNTAXIN 23 254 IPR045242 -
Pte18g01250 267 Pfam Syntaxin-like protein 28 124 IPR006011 GO:0016020
Pte18g01250 267 CDD SNARE_Qa 177 229 - -
Pte18g01250 267 FunFam Syntaxin-22 like 167 267 - -
Pte18g01250 267 MobiDBLite consensus disorder prediction 125 144 - -
Pte18g01250 267 SMART tSNARE_6 169 236 IPR000727 -
Pte18g01250 267 Gene3D - 14 130 - -
Pte18g01250 267 Pfam SNARE domain 211 262 IPR000727 -
Pte18g01250 267 Gene3D - 168 267 - -
Pte18g01250 267 MobiDBLite consensus disorder prediction 125 145 - -
Pte18g01250 267 SUPERFAMILY t-snare proteins 22 224 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01250 Pte-Chr18 24624222 24626922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01250 1 254 SNARE and Associated Proteins AT5G46860 57.308 9.00e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01250 - - aip:107604899 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01250 18 24624222 24626922 Pte18g01250 18 24624222 24626922 RCT