Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01236 ATGGAGAGGGAGATGCTGCAGCGAGCTCAAGCTATTGCTTGGATGCAAGGTGATGTGGAAGATGCTGCTTCATGGACCAGAAATAACAACGAAAGTAAACACAGAGATGAGGACTTGACGACCATGACCGCCGGCGGTACTGCTGGTTGTGTTCCTCTTTCTTCCTTCAAGTCTATGCTTGAAGGTGACTGGTACTTGAACCCAGCTCAGCAAGACCAGAGTGCTCTCCCCCAGAATCACCTTGATAATAGAGATATTGGGTTTTGTTCCAATACAGATGATGTTTTTCTGTTGCATACAATGGATTCGTCTTCTTCTTGTTCACCTGCATTTGCTCTTGACCCGTCACAGCCACAGAATTTCTTGCCACCGAAATCATGTTTCTCTTCGCTGTTCAATGTTGTTCCCAACAACCCTTTTGACAATGTCCTTGATTTGGACTGTCAAAGTGGCTTCCTTGGTCAATTTCAACCCAACCATGCTTCTAATTCCCCGGTTTTGATGGGGTTCACGGGTTTGAACTCTCAATCTCACATAAGAACTTTGGAATTGGCTTCAACATCTGACTTTGCCGGCACTCGGTTGATGTCAGACAATGCCGTTGGAATCGGAAATGGGTTGGGTCCTACGGGCTTTGAAAGTTTAGACGGTCCTCCTGGTTCTTTCTTTCTAAACAGAGCTAAGGTCTTGAGACCACTCGAGGTCTCTACTCCTGCGGGTGCGCAGCCAACTTTGTTTCAGAAGCGTGCGGCGCTGAGACAAAGTTCTGTTAGAGCTGATAAGTTGAGTACTCTGGAGATTTCAGCATCGAGATTCGATGGAGATTCAGCGGCTTTAGGGAAATTGGACAAAAAGAGGAAGAAAAATGATGAGGGTGAACTTGAGGAAGCTAGCGTTGATGCTAGTGGGTGGAATTATGATTCTGATGACCTCACTGAGAATGTTAAGCTCGAAGATGATGGAAATAATGGAGGAAGCAACTCTAATGCCAACAGTACTGTAACTTGTGGAGACCAGAAGGGTAAGAAGAAAGGATTACCAGCAAAAAACCTTATGGCTGAGAGGCGAAGGAGGAAGAAACTGAATGATAGGTTGTATATGCTGAGGTCCGTTGTGCCAAAGATCAGTAAGATGGATAGGGCTTCCATCCTTGGGGATGCCATTGACTATTTGAAGGAGCTGCTGCAAAGGATCAATGATCTCCACAATGAATTGGAATCAACACCACCTGGCTCTTTGCCTTCTTCTACTAGTTTTCACCCTCTGACACCAACTCCACCAACCCTTCCCAGCCGCATTAAGGAAGAATTATGCCCTAGCAACTTGCCTAGCCCCAAAAACCAACCTGCAAGGGTTGAAGTAAGACTGAGGGAAGGAAGAGCTGTCAACATCCACATGTTCTGTGCCCGCAGACCAGGTCTCTTGCTTTCGACTATGAGGGCTCTGGATAACCTTGGATTGGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTTGCTTTGGATGTGTTCCGCGCTGAGCAATGCAGGGAAGGCCAGGATGTTCTCCCTGAGCAAATCAAAGCAGTGCTGTTGGATACAGCCGGATTCATGGCATGA 1602 0.4657 MEREMLQRAQAIAWMQGDVEDAASWTRNNNESKHRDEDLTTMTAGGTAGCVPLSSFKSMLEGDWYLNPAQQDQSALPQNHLDNRDIGFCSNTDDVFLLHTMDSSSSCSPAFALDPSQPQNFLPPKSCFSSLFNVVPNNPFDNVLDLDCQSGFLGQFQPNHASNSPVLMGFTGLNSQSHIRTLELASTSDFAGTRLMSDNAVGIGNGLGPTGFESLDGPPGSFFLNRAKVLRPLEVSTPAGAQPTLFQKRAALRQSSVRADKLSTLEISASRFDGDSAALGKLDKKRKKNDEGELEEASVDASGWNYDSDDLTENVKLEDDGNNGGSNSNANSTVTCGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPSSTSFHPLTPTPPTLPSRIKEELCPSNLPSPKNQPARVEVRLREGRAVNIHMFCARRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDTAGFMA* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01236 533 MobiDBLite consensus disorder prediction 319 338 - -
Pte18g01236 533 CDD bHLH_AtAMS_like 348 419 - -
Pte18g01236 533 SMART finulus 351 400 IPR011598 GO:0046983
Pte18g01236 533 Pfam Helix-loop-helix DNA-binding domain 352 394 IPR011598 GO:0046983
Pte18g01236 533 CDD ACT_UUR-ACR-like 464 524 - -
Pte18g01236 533 MobiDBLite consensus disorder prediction 283 345 - -
Pte18g01236 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 420 IPR036638 GO:0046983
Pte18g01236 533 Gene3D - 339 408 IPR036638 GO:0046983
Pte18g01236 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Pte18g01236 533 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 241 531 - -
Pte18g01236 533 FunFam BHLH transcription factor 341 409 - -
Pte18g01236 533 Coils Coil 532 533 - -
Pte18g01236 533 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01236 Pte-Chr18 24529463 24534045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01236 54 508 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.809 8.59e-146 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g01236 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01236 - - qsa:O6P43_009752 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01236 18 24529463 24534045 Pte18g01236 18 24529463 24534045 RCT
Pte18g01236 18 24529463 24534045 Pte15g00810 15 5897377 5898792 RCT