Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01232 ATGGCTAACAGATATTGGATAGTGTCTCTTCCGGTTCAAACTTCCGCATCTTCTCTATGGAATCAGCTTCAGGAGCAAATCTCAAAGCATTCATTTGATACTCCTCTTTACAGATTCAATATTCCTAATCTTCGTGTCGGGACTCTTGATTCTCTCCTGTCTCTCAGCGATGATCTTATAAAGTCAAACAGTTTTATGGAAGGAGTGTCAAGCAAGATCAGGCGGCAGATTGAGGATTTGGAGAGGGTTTCAGGTGCTGAGAGCAACACTCTCACGGTGGATGGAGTTCCCATTGATTCGTACCTGACGAGGTTTGTTTGGGATGAGGCGAGGTATCCTACTATGTCACCTTTAAGGGACATTGTTGACAGCATTCACAGTCAAGTAGCAAAGATTGAGGATGATCTCAAGGTTCGAGTTTCAGAATATAACAATGTCCGTGGCCAGCTCAATGCTATCAACCGAAAACAAAGTGGGAGCTTAGCTGTCCGTGATCTTTCTAATCTAGTGAAACCAGAGGACATTATAGCATCAGAAAATTTGATCACACTTCTTGCGATTGTTCCAAAATATTCTCAGAAGGATTGGCTCTCAAGCTATGAAACTTTGACAAACTATGTGGTTCCCAGGTCCTCTAAGAAGTTGTACGAGGACAATGAATATGCTCTTTATAATGTAACACTGTTTCATCGTGTTGCAGACAATTTTAGAGCTAATTCTCGTGAAAAAGGATTCCAGATTCGTGATTTTGAATTTAGTCCTGAAGCACAGGAGAATCGGAAACTGGAGTTGGAGAAACTGATGCAAGACCAGGAAAGAATGAGGAGTTCCCTTCTGCAGTGGTGTTATACAAGTTATGGCGAGGTTTTTAGCTTGTGGATGCACTTTTGTGCTGTTCGAATCTTCACAGAAAGCATTCTGAGATATGGTTTGCCTCCATCATTCTTGGCATGCGTTTTAGCTCCATCGTTAAAAGGGGAGAAGAAAGTTCGCTCAATCCTTGAAGGCCTTTGTGATAGTGCAAACAGCACGTACTGGAAGACTGATGATGATGTGGGAGGAGGGTTCACTGGACTAGCAGGCGATACCGATACCCACCCATACGTTTCATTCACCATCAGTCTTGTTTGA 1131 0.4279 MANRYWIVSLPVQTSASSLWNQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLIKSNSFMEGVSSKIRRQIEDLERVSGAESNTLTVDGVPIDSYLTRFVWDEARYPTMSPLRDIVDSIHSQVAKIEDDLKVRVSEYNNVRGQLNAINRKQSGSLAVRDLSNLVKPEDIIASENLITLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYNVTLFHRVADNFRANSREKGFQIRDFEFSPEAQENRKLELEKLMQDQERMRSSLLQWCYTSYGEVFSLWMHFCAVRIFTESILRYGLPPSFLACVLAPSLKGEKKVRSILEGLCDSANSTYWKTDDDVGGGFTGLAGDTDTHPYVSFTISLV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01232 376 Gene3D - 41 312 - -
Pte18g01232 376 FunFam V-type proton ATPase subunit C 163 251 - -
Pte18g01232 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pte18g01232 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pte18g01232 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pte18g01232 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Pte18g01232 376 SUPERFAMILY Vacuolar ATP synthase subunit C 1 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Pte18g01232 376 Gene3D - 163 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01232 Pte-Chr18 24497925 24502005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01232 1 377 Primary Pumps ATPases(2) AT1G12840 80.902 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01232 K02148 - jre:109001860 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01232 18 24497925 24502005 Pte18g01232 18 24497925 24502005 RCT
Pte18g01232 18 24497925 24502005 Pte15g00868 15 6331876 6335915 RCT