Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01225 ATGAATTTTCGGTGTCATTTCCCAACAAAGATGAATATGATATCGCCTTGTGATTTTTGTGAACATAGAACAGCGGTCTTGTACTGCAGAGCTGACTCCGCCAAGCTCTGTTTGTTTTGTGACCGACAAGTTCACTCTGCCAATGCTCTCTCCCTCAAGCACGTTCGTTCTCAAATATGCAATAGCTGTCGCAATGAACCAGCTACCATTCTGTGTTCCTCTGACAATTTCATGCTGTGCCATGACTGTTTCAACAACTCCTCAGCTTCAGCCATGTCTGTCGGAGACTGCACCTCACTTGAAGGGTTCTCTGGCTGTCCATTGCCTGCAGAACTCGCTTCTGTACTTGGGTTTCATATAAAAACGGAAAAATTCCTCAACACAGAATCTGGGCATAATCTGCACGAGCCTCCAAAAAAATATGAGCCCCCTGTTTTTCAGTCTTCTTGTGAAGGACAAATTCTAAGCTATGATAAGTATAAAGAAGAATTACATGAGCAATTACAGCAGTTCATAAAAAGATGTGATTTTCTCCTAACAGATAGCAGTAGTACTGAATTGGTTCCTACAAGTCCGCTGAGTGAATCTGCACAGTTGATGGAGAGCTTTGATTTGGACAACGGTAAAGATGAGAACTTTCTCCAGAAACAAACGCCATTTACGTCTTTGCTTAGGTTGCCTGATTATAGACATACTGGTAAGACTAATTGTGCATCTGCTGGCGATTTCATGTGGGAGTGCAATTCAACATATCAACCAAGTCAGGTTTGGGATTTTAAAGTAGGGAAATCAAGACAATATGAAAAACCAAGTTTGAAGATAGCAGATTATGGATATGACTTTCAGGATTCTCGAATGAATTTTTGGAGTGATGATCTGGAAGATTCTGTAACAGGTTCAAATGTGTTTCCCCCCCGTATGTGTGATACGAGTGACATGACAGTTGCTGAGGACATTCTATTGAGATATAATCAATCTGACCAGTCACCTTCAAACCAAGTAATCAACACCAAAGCAAACAAAAAATTTAAAGGAAGATTGGCATCAGATTCCTTGTCTGAAGCCATCATGCATAGTGCAGAAAAATCTGTTTTTTCCATGGAGCAGCTTTTGATTGAGGGTGCAAATATAGAAGCAGTTCCTAGTTTTAATGCAGATTTGTTCGCAAAGAATAGACGAGAGGCCATGTTACGCTACAAAGAGAAGAAGAAAACTCGCAGGTACGACAAGCACATTCGTTATGAATCGAGAAAGGCGAGGGCTGATATGCGGAAGCGAGTGAAAGGTCGATTTGTTAAAGCAAATGAAATGATGGATGCTGATGTCCATGAAAATTACCATATTTGA 1347 0.4076 MNFRCHFPTKMNMISPCDFCEHRTAVLYCRADSAKLCLFCDRQVHSANALSLKHVRSQICNSCRNEPATILCSSDNFMLCHDCFNNSSASAMSVGDCTSLEGFSGCPLPAELASVLGFHIKTEKFLNTESGHNLHEPPKKYEPPVFQSSCEGQILSYDKYKEELHEQLQQFIKRCDFLLTDSSSTELVPTSPLSESAQLMESFDLDNGKDENFLQKQTPFTSLLRLPDYRHTGKTNCASAGDFMWECNSTYQPSQVWDFKVGKSRQYEKPSLKIADYGYDFQDSRMNFWSDDLEDSVTGSNVFPPRMCDTSDMTVAEDILLRYNQSDQSPSNQVINTKANKKFKGRLASDSLSEAIMHSAEKSVFSMEQLLIEGANIEAVPSFNADLFAKNRREAMLRYKEKKKTRRYDKHIRYESRKARADMRKRVKGRFVKANEMMDADVHENYHI* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01225 448 SMART bboxneu5 12 59 IPR000315 GO:0008270
Pte18g01225 448 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 16 436 - -
Pte18g01225 448 Pfam CCT motif 392 434 IPR010402 GO:0005515
Pte18g01225 448 ProSiteProfiles Zinc finger B-box type profile. 55 83 IPR000315 GO:0008270
Pte18g01225 448 CDD Bbox1_BBX-like 16 59 - -
Pte18g01225 448 ProSiteProfiles CCT domain profile. 392 434 IPR010402 GO:0005515
Pte18g01225 448 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01225 Pte-Chr18 24449070 24452555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01225 14 436 C2C2-CO-like Transcription Factor Family AT2G33500 34.152 2.25e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte18g01225 CCT 8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01225 - - qsa:O6P43_009706 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01225 18 24449070 24452555 Pte18g01225 18 24449070 24452555 RCT