Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01208 ATGGAGAATTTTCTGGTACTGTTTCCTCCTTCATCAACGACAGTTCCGACCTTCCCTGATCACTCAACTACTAGTACTGGTATTGCTCTCATTAATAACAGTATCCTTGGTGAGATCAGTTCAGATGGTTTGTTGGGTTTGAGTAGTAACGTCGACAGTGATGGAAGTGTACCTGCAGACAGGGCTGAAGTTAAAGACTTCACGCAGAATAGTCAAATCAATGGAGCTGAAGCGGACAAGCATCAAAGTATTGCAGTGCATGCATGCAGAAGCTACTATCGGTGCAGGCATCATGATCAAGGGTGCAATGTGAAGAAGCAAGTTCAACGTCTAACTAAAGACGAGGGAGTCGTGGTGACTACTTACGAAGCAAAGCATCAAGATCAAGCACCAGATGTTCAGTATCAGCAGCAAAAAAAGACAGAGACTTTGTTTAGAGTTTACAATTGTACAGCTGACATGAATTGGGACTGGAATTGGAAAGAATTTGCTTGGTTTCCAACGGAGTTGGATCCTTCAGCTGGTGGAGGTAGGGAGGAGCAGGTGAATTACAGAGCTCCGGTGGGGTGGAGGGTTAGCGAAACTTCTGATACCCAAGGCAGACCGATGGCGGATAGGGCCGGTGACCCAAAAGCATCCGAGACCTTGCCATCACCTTCCTGGTCAGCAAAGAGGTACCGTCGTCCAAATGGATCACAGAACATCCCATGCTTGGTTGATGGTTGCAACTCTGATCTCAGTAATTTTAGAGAGTACCATCGCCGGCACAGGGTCTGTGAACAACACTCGAAAACTCCAATCGTTGTTGTAGGTGGCAAGCAACAAAGATTCTGTCAGCAATGTAGCAGATTCCACGCTCTGGGAGAGTTTGATGAAGTGAAGAGAAGTTGCAGGAAGCGTCTTGATGAACACAATAGGCGCAGAAGGAAACCTCAGTTATCATCTCTATTCATGACCGGCGAGAGATTTCTGACTAGCTACAAAGGACCCAGAATCCTGCAATTCAACGATCCCGATATATATGCTGCACTCAATGTCAGAAGTGCGTGGCCTGTGTTGGCTAAAAATGAATCGATGTCTAAGATGTATGATCATCAGCAACTTTGGAACGCCGTTGATCAACAAGTTCCTCCTAGTTCCTTAACTGACATGAAGCGTGGAAGAGGTTCACAATTATCGTTTTTGCAAGAATATGACGATAGATCTTGTCATGGCAATAGAGCAACCTCCGGAGTATCAGTGTATACCAACAAGGCACTTTCTGGAACTGCTGTCTCACCGGAAAGTGGACAGGGAAGCCAAAGGCTCTCTGATGGGACAACTCGATCAATAGACTCGGGTTGTGCTCTCTATCTTCTGTCATCAAATACAGCACCTACTTCAGAATGGAGCTTGGTGCAGTCTAATAGTATAGGTCATCCTGAACAAGCTCAGTGCCTGGAGCGGCATTTTGGAGCTGCAGACAAGCACCTCTCATCTCGTGGCGATAAAGACTAG 1497 0.4623 MENFLVLFPPSSTTVPTFPDHSTTSTGIALINNSILGEISSDGLLGLSSNVDSDGSVPADRAEVKDFTQNSQINGAEADKHQSIAVHACRSYYRCRHHDQGCNVKKQVQRLTKDEGVVVTTYEAKHQDQAPDVQYQQQKKTETLFRVYNCTADMNWDWNWKEFAWFPTELDPSAGGGREEQVNYRAPVGWRVSETSDTQGRPMADRAGDPKASETLPSPSWSAKRYRRPNGSQNIPCLVDGCNSDLSNFREYHRRHRVCEQHSKTPIVVVGGKQQRFCQQCSRFHALGEFDEVKRSCRKRLDEHNRRRRKPQLSSLFMTGERFLTSYKGPRILQFNDPDIYAALNVRSAWPVLAKNESMSKMYDHQQLWNAVDQQVPPSSLTDMKRGRGSQLSFLQEYDDRSCHGNRATSGVSVYTNKALSGTAVSPESGQGSQRLSDGTTRSIDSGCALYLLSSNTAPTSEWSLVQSNSIGHPEQAQCLERHFGAADKHLSSRGDKD* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01208 498 Gene3D - 228 298 IPR036893 GO:0003677|GO:0005634
Pte18g01208 498 Gene3D WRKY domain 69 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte18g01208 498 SMART WRKY_cls 77 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte18g01208 498 ProSiteProfiles Zinc finger SBP-type profile. 234 311 IPR004333 GO:0003677
Pte18g01208 498 FunFam Squamosa promoter-binding-like protein 14 229 298 - -
Pte18g01208 498 Pfam SBP domain 237 310 IPR004333 GO:0003677
Pte18g01208 498 MobiDBLite consensus disorder prediction 188 228 - -
Pte18g01208 498 ProSiteProfiles WRKY domain profile. 90 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte18g01208 498 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 185 464 IPR044817 GO:0003677
Pte18g01208 498 SUPERFAMILY SBT domain 236 316 IPR036893 GO:0003677|GO:0005634
Pte18g01208 498 Pfam WRKY DNA -binding domain 89 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte18g01208 498 SUPERFAMILY WRKY DNA-binding domain 88 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01208 Pte-Chr18 24309082 24314384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01208 231 336 SBP-box Gene Family AT5G50670 62.617 1.41e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte18g01208 SBP 8.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01208 - - qsa:O6P43_009724 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01208 18 24309082 24314384 Pte18g01208 18 24309082 24314384 RCT