Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01179 ATGGTGAGCGAAGAAGCCAAAGAGAGTCCTCCAAACCCAAAGAGTAAGCAACCAAAAGAAACAAACGCAGTAGAGAATGGCCAAAACCTGGACACCATTGTATTCAGTCCGAGATTCAAGTCTATGGCTGCAATGGCTGGATGGGACGAAGAGGCCCTTCTGATTGCTACCCTCATTGTCGAAGACACGCCTGATAGAGATCTCAAGTACAGGAAACGCTCACACTTGCATTTAAAGACACCGCCAACCAATTCAAGAAGAAAACGCAGACCTCAGAGAAGTCCAGAAGCAATCCCCGTTGCTGTTCTTGATCTTGATCAAGGAGAAACCACCAGAGAAGATAGCGAGAAGAAGAATACAGAAACGCAAGCCCTTGACGAAGAAAAGGAAGTAGGAGAAAAAAGATCCGATTCCGTGCCTTCCACCAGTTCTACTCTTCCATGCATGGATAAACTAAGGGAGGAGCTTTCCTGTGCGATTTGTTTGGAAATATGCTTCGAACCTAGCACTACTACTTGTGGACACAGCTTTTGTAGGAAATGCTTGCGGTCTGCGTCTGACAAATGCGGGAAGAAGTGTCCCAAGTGTAGGCAACTGATAAGCAATGGGAGATCTTGCACGGTGAACACAGTTCTGTGGAATACTATACAGCTTCTATTTCCCAAAGAAATAGAGGCTAGGATTGCAGCTGGTGTTCTAAATGGCAGAGAAGCTCAGTCCTTAAGTCCGGAGAATGCATTTTATCACAACCTTAGGAATGGCAACACAAGATCATCTGGGGACTCTAGTAGAGCATCAAGAACAAGGAGTAGAGAGGAGAGCAGAGAGGTGATAACTGGCCCAAGGCAAGCTCAAACCACTTCAAATTTTCAATTTTGGCCAAGGGGTGCTGAGAATCGAAGGGACCAGCAAACAAGATCGTCACACAGTAACACAAGCAGAAGACGTATACCAAGCCAAGATGAGGACGCTGCATTAGCTCTAAGATTGCAGAGACAAGAGTTTTTGGACGCATTCATAGGAACACAGACCAATCATCTGTCCTCCTCGAGAGCAAACCTGAGGGCACTGGCATCTAGAGCCATTAATCTTCGCAGCAGAAGTAGACGACACGCATGA 1119 0.4629 MVSEEAKESPPNPKSKQPKETNAVENGQNLDTIVFSPRFKSMAAMAGWDEEALLIATLIVEDTPDRDLKYRKRSHLHLKTPPTNSRRKRRPQRSPEAIPVAVLDLDQGETTREDSEKKNTETQALDEEKEVGEKRSDSVPSTSSTLPCMDKLREELSCAICLEICFEPSTTTCGHSFCRKCLRSASDKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPKEIEARIAAGVLNGREAQSLSPENAFYHNLRNGNTRSSGDSSRASRTRSREESREVITGPRQAQTTSNFQFWPRGAENRRDQQTRSSHSNTSRRRIPSQDEDAALALRLQRQEFLDAFIGTQTNHLSSSRANLRALASRAINLRSRSRRHA* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01179 372 MobiDBLite consensus disorder prediction 248 263 - -
Pte18g01179 372 SUPERFAMILY RING/U-box 150 221 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 299 320 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 1 29 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 107 136 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 248 320 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 279 294 - -
Pte18g01179 372 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Pte18g01179 372 MobiDBLite consensus disorder prediction 15 29 - -
Pte18g01179 372 Pfam Zinc finger, C3HC4 type (RING finger) 158 196 IPR018957 GO:0046872
Pte18g01179 372 SMART ring_2 158 196 IPR001841 -
Pte18g01179 372 ProSiteProfiles Zinc finger RING-type profile. 158 197 IPR001841 -
Pte18g01179 372 MobiDBLite consensus disorder prediction 71 144 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 264 278 - -
Pte18g01179 372 MobiDBLite consensus disorder prediction 72 88 - -
Pte18g01179 372 PANTHER UNCHARACTERIZED 103 363 - -
Pte18g01179 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 227 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01179 97 201 C3H Transcription Factor Family AT2G42030 31.132 2.91e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01179 - - qsa:O6P43_004759 408.297