Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01178 ATGGGAAGGCAGCCGTGTTGTGATAAAGTTGGCTTGAAAAGAGGACCATGGACAATAGAGGAAGATCACAAACTTGTCAATTTCATTCTCAACAATGGTATCACCTGCTGGCGTACGGTTCCTAAACTTGCAGGCTTACTGAGATGCGGTAAGAGCTGTAGACTGAGATGGATCAATTATTTGAGGCCAGACCTGAAGAGAGGAAGCTTTACAGAATCTGAAGAAAATCAAATTATTCAGCTCCATGCACTTATTGGGAATAGGTGGTCTAAAATTGCAAGTCATTTTCCTGGGAGGACAGACAATGAGATCAAGAACCATTGGAATACTAGAATCAAGAAGAAGTTAAAGCTGCTTGGCATAGACCCTGTGACACACGAGCCAGTTGAGAAAAAGGAGGATTCTGTCAGCAAAAGTACAAGTACTCAATCAGAAGGGCAAGAGGAAGTCATGGAATGTGTAGAGATACGATCCATTGATAAAGATGCAGAGAAACAACATGCTGCAACAGAAGACAATGATACGAAAAAGGAAACCAGCAACTCGGATGGTACTGCTGATAATCTCATAAGCTATTACGGGACGTTATGTGGAGACTTGAATTTTGGATTATGGGGCAACCAAGTGGCCAATACAAGCACCGGAAGCACCAGTTCCTACAATTCTTCTATTTCTCTTGAGGATTCCAACCATCTTTCTGTTGACGAATCCCCCAAAGTTCTGCAAGAGTATTCTCTACAAGGATGGGTTGATAGCATTGATTCCATGCTCTCATGGTCATGGGATAGCCTTAATCATCTTGAGCAAGATCTTTTTCTTCTTGGGAAATAG 831 0.4212 MGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNGITCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGSFTESEENQIIQLHALIGNRWSKIASHFPGRTDNEIKNHWNTRIKKKLKLLGIDPVTHEPVEKKEDSVSKSTSTQSEGQEEVMECVEIRSIDKDAEKQHAATEDNDTKKETSNSDGTADNLISYYGTLCGDLNFGLWGNQVANTSTGSTSSYNSSISLEDSNHLSVDESPKVLQEYSLQGWVDSIDSMLSWSWDSLNHLEQDLFLLGK* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01178 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 207 - -
Pte18g01178 276 FunFam MYB transcription factor 11 67 - -
Pte18g01178 276 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pte18g01178 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g01178 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g01178 276 CDD SANT 16 61 IPR001005 -
Pte18g01178 276 MobiDBLite consensus disorder prediction 127 151 - -
Pte18g01178 276 CDD SANT 69 110 IPR001005 -
Pte18g01178 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte18g01178 276 FunFam MYB transcription factor 68 129 - -
Pte18g01178 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g01178 276 Gene3D - 68 152 - -
Pte18g01178 276 Gene3D - 11 67 - -
Pte18g01178 276 SMART sant 66 114 IPR001005 -
Pte18g01178 276 SMART sant 13 63 IPR001005 -
Pte18g01178 276 MobiDBLite consensus disorder prediction 163 181 - -
Pte18g01178 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte18g01178 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g01178 276 MobiDBLite consensus disorder prediction 163 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01178 Pte-Chr18 24092041 24093132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01178 1 175 MYB Transcription Factor Family AT5G16600 62.295 2.05e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01178 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01178 K09422 - cave:132182949 340.502