Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01150 ATGGACTCTTCAGCCAATGAAGCTGATGTTTCCAATGGAGAAACAAATAATTTCAGGTCATATGACCATAGAGAAGAAGATGATGACAAGTCACAACCTCACACGGGGGATGGTGCCAGTCCTGGAAAAATATTTATAGGAGGTTTAGCGAGAGAAACAACCATAGCCCAATTTATCAAGCATTTTGGTAAGTATGGTGATATCACGGATTCTGTGATTATGAAGGATCGAAAGACCGGGCAACCTCGTGGGTTTGGGTTTATAACTTATGCAGATCCCTCAGTGGTTGATCAAGTTATTCAAGACAACCATGTCATTAATGGAAAACCAGTGGAAATTAAGAGGACAATACCAAGGGGAGCTGCAGGTTCTAAGGATTTCAAGACGAAGAAGATTTTTGTTGGGGGTATTCCTTCTACTGTGAATGAAGAGGAGTTTAGAGACTTCTTTACACGTTACGGTGAGGTCAAGGAGTACCAAATAATGCGAGACCATTCTACCAATCGCTCTCGTGGCTTTGGGTTTATCACATTCGACTCAGAAGAAGCAGTAGATGATCTCTTGGCTAAGGGGAACAAGATTGAGTTTGCTGGAGCTCAGGTGGAAATAAAGAAGGCTGAACCTAAGAAGCCAAATCCACCACTTCCCGCTAAGCGTTATAGTGATTCAAGGCCCCCTTTTGGTGGTGGCTATGGCGATGCTTATGATGGTTTTGGCAGTGGCTTCAGTGGTGGTGCAGGTTATAGGTCGGGTGGGTCCTATGGAAGCAGAGGTGGTGCTTATGGTGGCTTTGCTGCAAGCGAACTTGGTGGGTATGGAGCTTACGGAGGCTACGGTGGACCTATGGGGCCTTATAGGGGAGATCCCTCCCTAGGGTACTCAGGTCGTTATGGAGGTTTTAGGGGCTATGATCTTGGTGGTTATGGCGGACCTGGTGAAAGTTATGGGGGATATGGTGGTCCTGGTGCTTCTGGTGGTGCCTATGGGAGCAATTATGAAGGCGGCTATGGGAGTGGTAGTGGAGGCCCCTTTTATGGAAGTAGAGGGGGATATGGAGGAGCAGGGAGCGGTCGGTATCATCCTTATGGAAGTTCCTCACTGCTACTGGCCCACTGGTACTACCGATTCAGATTTCAGAGTGCAGAACGAACTCGTACAATCTTTTCTTTTGTGGTTAATAAGACGCTGTGTTGTTAG 1197 0.4678 MDSSANEADVSNGETNNFRSYDHREEDDDKSQPHTGDGASPGKIFIGGLARETTIAQFIKHFGKYGDITDSVIMKDRKTGQPRGFGFITYADPSVVDQVIQDNHVINGKPVEIKRTIPRGAAGSKDFKTKKIFVGGIPSTVNEEEFRDFFTRYGEVKEYQIMRDHSTNRSRGFGFITFDSEEAVDDLLAKGNKIEFAGAQVEIKKAEPKKPNPPLPAKRYSDSRPPFGGGYGDAYDGFGSGFSGGAGYRSGGSYGSRGGAYGGFAASELGGYGAYGGYGGPMGPYRGDPSLGYSGRYGGFRGYDLGGYGGPGESYGGYGGPGASGGAYGSNYEGGYGSGSGGPFYGSRGGYGGAGSGRYHPYGSSSLLLAHWYYRFRFQSAERTRTIFSFVVNKTLCC* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01150 398 Gene3D - 123 214 IPR012677 -
Pte18g01150 398 Gene3D - 2 122 IPR012677 -
Pte18g01150 398 SUPERFAMILY RNA-binding domain, RBD 127 236 IPR035979 GO:0003676
Pte18g01150 398 MobiDBLite consensus disorder prediction 1 17 - -
Pte18g01150 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Pte18g01150 398 SMART rrm1_1 43 114 IPR000504 GO:0003723
Pte18g01150 398 SMART rrm1_1 131 204 IPR000504 GO:0003723
Pte18g01150 398 MobiDBLite consensus disorder prediction 1 43 - -
Pte18g01150 398 SUPERFAMILY RNA-binding domain, RBD 38 120 IPR035979 GO:0003676
Pte18g01150 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Pte18g01150 398 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Pte18g01150 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Pte18g01150 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Pte18g01150 398 MobiDBLite consensus disorder prediction 18 34 - -
Pte18g01150 398 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 17 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01150 Pte-Chr18 23875303 23878790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01150 2 244 Eukaryotic Initiation Factors Gene Family AT2G23350 24.444 8.48e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01150 K12741 - qsa:O6P43_008913 394.045