Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01148 ATGGCTGTCTTACAGTCCAAACTCTTGTCTCTTAATCCAGACAGAGCTCATGTTCCACGTACAAGTAAACTCATTGCCATTACTTTCACACCCACTGCAAAAGTGGGCACTTCCACGAACAATGCTCAATTTTCGTTTTCCTACACAACATGTGATAATACTAAATTCAACTGCAATCGCTTTAAGCTGCCAGCTTCGACGATTCCTCACGAATACACTGTCCCAAACGAGGAAAAGGAAGAGGGAGAACATGAGTTTTCAGAATTGAAAAAAGTTTTCCGAAAACGGGCTGAGCTTATTGGGTCGATTTTGACGGGCGGTAGTTGGTGGGGCTTGTGTGACAATCAGGAAGAAAAGGATATTAAAGTAGCAAAGCCGATTACGGCACTCAATGCACTGCGTCAGTTGTGGAGTTTTGTTGCAGACAAGAAATGGATTGTCTTGGTTGCAATTGGTTCTTTGATCGTCGCTGCCATTTCCGAGATTAGCATGCCAGGTATACTGGCTGCATCGATATTTTCGGCACAGAGGGGCGAGACTGAGGTGTTCGTTAGGAACATAAAGCTGTTGGCTTTTCTATGTGCCACTTCCGGAATATGCAGTGGTCTAAGGAGCGGCTGCTTTGGAATTCTAAATGTCATCCTTGTTAAGCGTCTTAGGGAAGCTTTATTTTCAGCTTTTCTTTTTCAGGATATTTCATTTTATGACAGAGAGGAGGTTGGTGGCTTAACAAGCAGGCTAACAGCTGATTGCCAAAAACTATCCCATCTGATAGAATATGACCTTCATTTTATTTTACGCAACAGTCTACAGGGTACAGGTGCAATAATCAATTTGCTGAGTTTATCTTGGCCATTAGCATTGTCTGCCTTGGTGATTTGCTCTGCAATAGCTGCTATTTTCCTGGTTTATGGCTCGTACCAAAGGAAAACAGGAAAGGTGGCCCAAGAGTTTACAGCTTGTGCCAATGAAGCAGCAGAGGAAACACTTGCAATGATGAAAACTGTCCGAGTCTATGGAACTGAATGGAAAGAAGTTGAACGGTACAAGCATTGGCTGGAGAAGTTGGCTTTTGTAGCTACCAGACAGAGTGTAGCTCACGGATTATGGAGTCTGAGTTTTCATAACCTTTATCGGGCAACTCAGATTTTTGCTGTACTGTTGGGAGGATTTTCAGTTCTGAGCATCCGTATATCACCAGAACAACTCACCAAGTATGTAATGTACTGTGAATGGTTGATTTATGCTGCTTGGAGGGTGGCAGACAATTGCTCGTCATTGCTTCAGTCCATTGGAGCAACTGAAAAAGTTTTTGAATTCTTAGATTGTTCTCATACGGAGCAATTTCTGTTTGAAGGAGCAAAATTACAGAGATTAAGGGGACAGATTCAGTTTGTGAACCTGTCATTCTGTTATCCTACAAGGATGGAGGTTCCTGTCCTAGAACACATAAACTTCTCTATACAACCAAAGGAAGTGCTGGCAATTGTTGGTCTGAGTGGTAGTGGAAAAAGCACGTTAGTCAACCTTTTACTTCGTCTCTACGAGCCAATTGATGGTCAGATTCTTATAGATGATATTCCTCTCACTGAGTTGGACATCAGATGGCTGAGGAAAAGCATTGGATATGTTGGACAGGAAACGCATCTCTTTCATATGGATATCAAGTCAAACATCAAATATGGTTGCTCTCGGGACATCAAGCAAGAAGACATAGAATGGGCTGCTAAGCAGGCTTATGCTCACGAATTTATTCAAAACCTTCCTCATGGCTACGAAACCCTTGTTGATAGCAATACGCTTAGTGGGGGACAAAAACAACGAATTGCTATTGCTAGGGCTATTCTTCGAGAACCAGTCATTTTGATACTTGATGAAGCAACCAGTGCATTGGATTCTGAAAGTGAGCACTATATTAAGGAGGTGATCTACACTTTGAAGAGGGGTTGTAAAACAAGGACCATCATAGTCATAGCACATCGGCTGTCTATCGTAGAAGCTGCCGACAGAATCATTGTAGTGGAGGGCGGCCGCATTATTGAGGTAGGCAACCACAGGCAACTCCTCCTCAATGATGGACTGTATGCAAAGCTAAATAATATTCAGGGAGATGTATTGACTTGA 2124 0.4266 MAVLQSKLLSLNPDRAHVPRTSKLIAITFTPTAKVGTSTNNAQFSFSYTTCDNTKFNCNRFKLPASTIPHEYTVPNEEKEEGEHEFSELKKVFRKRAELIGSILTGGSWWGLCDNQEEKDIKVAKPITALNALRQLWSFVADKKWIVLVAIGSLIVAAISEISMPGILAASIFSAQRGETEVFVRNIKLLAFLCATSGICSGLRSGCFGILNVILVKRLREALFSAFLFQDISFYDREEVGGLTSRLTADCQKLSHLIEYDLHFILRNSLQGTGAIINLLSLSWPLALSALVICSAIAAIFLVYGSYQRKTGKVAQEFTACANEAAEETLAMMKTVRVYGTEWKEVERYKHWLEKLAFVATRQSVAHGLWSLSFHNLYRATQIFAVLLGGFSVLSIRISPEQLTKYVMYCEWLIYAAWRVADNCSSLLQSIGATEKVFEFLDCSHTEQFLFEGAKLQRLRGQIQFVNLSFCYPTRMEVPVLEHINFSIQPKEVLAIVGLSGSGKSTLVNLLLRLYEPIDGQILIDDIPLTELDIRWLRKSIGYVGQETHLFHMDIKSNIKYGCSRDIKQEDIEWAAKQAYAHEFIQNLPHGYETLVDSNTLSGGQKQRIAIARAILREPVILILDEATSALDSESEHYIKEVIYTLKRGCKTRTIIVIAHRLSIVEAADRIIVVEGGRIIEVGNHRQLLLNDGLYAKLNNIQGDVLT* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01148 707 FunFam Multidrug ABC transporter ATP-binding protein 455 705 - -
Pte18g01148 707 Gene3D - 453 704 IPR027417 -
Pte18g01148 707 Pfam ABC transporter transmembrane region 150 413 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01148 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 702 IPR027417 -
Pte18g01148 707 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 148 429 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01148 707 Gene3D ABC transporter type 1, transmembrane domain 128 445 IPR036640 GO:0005524|GO:0016020
Pte18g01148 707 SMART AAA_5 490 678 IPR003593 GO:0016887
Pte18g01148 707 ProSitePatterns ABC transporters family signature. 601 615 IPR017871 GO:0005524|GO:0016887
Pte18g01148 707 CDD ABC_6TM_TAP 150 437 - -
Pte18g01148 707 SUPERFAMILY ABC transporter transmembrane region 134 442 IPR036640 GO:0005524|GO:0016020
Pte18g01148 707 PANTHER ABC TRANSPORTER B FAMILY 117 700 IPR039421 -
Pte18g01148 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 701 IPR003439 GO:0005524
Pte18g01148 707 Pfam ABC transporter 481 629 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01148 Pte-Chr18 23844238 23851092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01148 218 702 Calmodulin-binding Proteins AT2G36910 34.000 5.35e-66 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01148 - - qsa:O6P43_008914 881.708