Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01117 ATGAATGAGATTGATAAATGTTGGAGATCGAACCCAGACTGGAGAAGAGATCGTTCCCAACTTGCCATGTGCTCAGTGGGCTTTGCTGGGAAGATGACTCACAACATTGGCACTGACCTCAGACATTACATAGTCACTGATTCCAGTGATAACCCGATCAACCCAACGCCTGGCACACTTAGACATGGAGTCACCATGATCAAAGGGAAGAAATGGATCACTTTCGTCAGAGACATGACTATTAGACTTGAAAAACCACTTCTCATTAGCAGCTTCACAGCCATTGATGGCCGAGGTGCCAACATTCACATTGCCGATAATGCATGCTTGACGGTCTTCAAGGCAAGCAACGTAATAATCCATGGCCTTCGGATACATCACTGCAAGGCGCAACCACCCAGCAAAGTGATGGGTCCTGATGGAAAGATAGTAAGCCTTGGGCATGTAGATGGAGATGCAATCAGATTGATCACTGCATCAAATGTTTGGATAGACCATAACACACTATATGCTTGCGAAGATGGTGTCCTCGATGTAACTCGTGGTTCTACAAACGTCACAGTCTCAAATAATTGGTTCAGATACCAAAACAAGGTCATGCTTCTTGGGCATGACGATGGGTACCTACGAGATAAGGGCATGAAGGTGACAGTAGTGTACAACCATTTTGGACCCAACTGCAACCAACGTATGCCAAGGTTGGTTCGCCATGGCTATGCACATGTGGCTAACAATTTGTACTTAGGCTGGCTGCAGTACGCCATTGGCGGTAGCATGAATCCTAGCATTAAAAGTGAAGCCAACCTTTTCATAGCACCGAAATCAGGGAGCAAGGAGGTCACGTGGAGAAATGGCGGCAATGAAGAAGTAGGGTCATGGAAGTTCTATTCAGTGGGGGATGTTTTTGAGAATGGTGCTGTGTTCAATGTTCAGTCAGGTGTGGGTGGAGCAAAGCCCAACTATGATAATGAACAACGTTTTCAAGTTTTCAACGCTGGACTAGTGAGGTCCTTGACAAGTTCATCAGGGGTTTTACAATGCACAGAAAATTCTCGTTGCTGA 1062 0.4576 MNEIDKCWRSNPDWRRDRSQLAMCSVGFAGKMTHNIGTDLRHYIVTDSSDNPINPTPGTLRHGVTMIKGKKWITFVRDMTIRLEKPLLISSFTAIDGRGANIHIADNACLTVFKASNVIIHGLRIHHCKAQPPSKVMGPDGKIVSLGHVDGDAIRLITASNVWIDHNTLYACEDGVLDVTRGSTNVTVSNNWFRYQNKVMLLGHDDGYLRDKGMKVTVVYNHFGPNCNQRMPRLVRHGYAHVANNLYLGWLQYAIGGSMNPSIKSEANLFIAPKSGSKEVTWRNGGNEEVGSWKFYSVGDVFENGAVFNVQSGVGGAKPNYDNEQRFQVFNAGLVRSLTSSSGVLQCTENSRC* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01117 353 SUPERFAMILY Pectin lyase-like 2 344 IPR011050 -
Pte18g01117 353 Gene3D - 1 346 IPR012334 -
Pte18g01117 353 Coils Coil 353 353 - -
Pte18g01117 353 PANTHER PECTATE LYASE 18-RELATED 2 351 IPR045032 GO:0030570
Pte18g01117 353 SMART amb_all 78 276 IPR002022 -
Pte18g01117 353 Pfam Pectate lyase 90 270 IPR002022 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 324 347 IPR018082 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 293 317 IPR018082 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 49 74 IPR018082 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 253 272 IPR018082 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Pte18g01117 353 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01117 Pte-Chr18 23545969 23547670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01117 32 285 Polysaccharide Lyase AT5G09280 73.622 1.20e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01117 K01728 - cave:132176682 565.074